Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00657 ATGGCTGACGCTTCCAACAACCCCGAATCGGCGGCGCCACCCTCCAATCCTCCGCCGCAGCCGGCCGAAGAAGAAGCCCCCAAAGACGTCGCCGAGGAGAAAGCTGTAATTCCACCTCCCCCTCCACCCGTCGAAGACAAACCCGACGACTCCAAAGCCCTTGTTCTAGTTGAAAAGGTTTCAGAACCAGATGAACCCAAATCCACTGAGGGCTCTGTAAACAGAGATGCTGTTCTAGCAAAAGTTGCAACAGAGAAGAGGTTGTCGCTGATTAAAGCTTGGGAAGAAAGTGAGAAATCAAAGGCTGAAAACAAAGCTCACAAGAAGCTGTCCTCTGTTGTGGCATGGGAGAATAGCAGAAAAGCGTCTGTGGAGGCTGAGTTGAAGAAGATTGAGGAAAGCTTGGAGAAGAAGAAGGCTGAATACGTTGAGAAAATGAAGAACAGAATTGCTCTGCTTCACAAATCTGCGGAGGAGAAGAGGGCGGTGATCGAAGCTATGCGCGGAGAAGATCTTCTGAAGGCGGAGGAGACGGCGGCGAAGTATCGCGCCACTGGTACTGCACCGAAGAAGCTTTTTGGGTGCTTTTAG 591 51.27 MADASNNPESAAPPSNPPPQPAEEEAPKDVAEEKAVIPPPPPPVEDKPDDSKALVLVEKVSEPDEPKSTEGSVNRDAVLAKVATEKRLSLIKAWEESEKSKAENKAHKKLSSVVAWENSRKASVEAELKKIEESLEKKKAEYVEKMKNRIALLHKSAEEKRAVIEAMRGEDLLKAEETAAKYRATGTAPKKLFGCF 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4001147 4002479 + Cp4.1LG05g06440.1 Cpe05g00657 469862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00657 196 PANTHER REMORIN 1.4 7 196 - -
Cpe05g00657 196 Coils Coil 121 148 - -
Cpe05g00657 196 Pfam Remorin, C-terminal region 86 191 IPR005516 -
Cpe05g00657 196 Pfam Remorin, N-terminal region 28 82 IPR005518 -
Cpe05g00657 196 MobiDBLite consensus disorder prediction 1 75 - -
Cpe05g00657 196 MobiDBLite consensus disorder prediction 45 71 - -
Cpe05g00657 196 PANTHER OS02G0117200 PROTEIN 7 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00657 - - - csv:101213855 268.085
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00657 Cpe08g00557 CCT
Cpe05g00657 Cpe09g00093 CCT
Cpe05g00657 Cpe08g00557 ECH
Cpe05g00657 Cpe09g00093 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00657 Cpe-Chr5:4001147 Cpe08g01362 Cpe-Chr8:9791225 9.84E-12 dispersed
Cpe08g00557 Cpe-Chr8:3662266 Cpe05g00657 Cpe-Chr5:4001147 1.26E-61 transposed
Cpe15g00318 Cpe-Chr15:4165001 Cpe05g00657 Cpe-Chr5:4001147 3.81E-56 wgd
Cpe05g00317 Cpe-Chr5:1770702 Cpe05g00657 Cpe-Chr5:4001147 4.04E-45 wgd
Cpe05g00657 Cpe-Chr5:4001147 Cpe09g00093 Cpe-Chr9:534309 3.67E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g347 . . . . . . . . Cmo06g01081 . Cma02g01472 . Car02g01233 . . . Cpe05g00657 . . . . . . . . . . . . . . . Cone12ag0317 . Cone9ag0765 . . Chy09g01204 . . . . . . Bpe11g00655 . . . Cmo02g01507 . Cma06g01060 . Car06g00892 . Cpe08g00557 . Bhi12g00226 . . . . . . Cla01g00283 Cam01g0293 Cec01g0286 Cco01g0299 Clacu01g0292 Cmu01g0278 Cre09g2229 Lsi09g00282 . . Cme09g01741
Vvi16g661 Blo06g01117 . Bda05g00072 . Bpe03g00289 . . Bma14g02086 . Cmo18g01268 Cma02g01062 . Car02g00805 . . Cpe05g00657 . Bhi01g01322 . . . . . . Cla01g00283 Cam01g0293 Cec01g0286 Cco01g0299 Clacu01g0292 Cmu01g0278 Cre09g2229 Cone1ag1155 Cone5ag0865 Cone14ag0091 Cone15ag0097 Lsi05g01228 Csa05g00303 Chy09g01204 Cme06g00994 Blo07g00413 Blo09g00109 . . . Bpe12g00425 Bma08g00336 . . Cmo02g01079 . . Cma18g01245 . Car18g01151 Cpe09g00093 . Bhi12g00225 . . Lac11g2116 Hepe06g1565 . Lcy12g1673 Cla05g00878 Cam05g0966 Cec05g0970 Cco05g0970 Clacu05g0954 Cmu05g0910 Cre05g0994 . . Chy06g00944 Cme09g01741
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000535 3 7 5 4 4 3 4 3 2 3 3 3 4 3 3 4 3 7 3 3 2 3 3 3 3 3 3 6 4 3 107
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00657 Cpe_Chr05 FPKM 1.995842 3.022038 1.262179 1.52353 1.205586 1.029097 1.171988 0.029692 0.0 0.0