Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00676 ATGGATTTTCCCGATGCTTCTTCTTCTTCTAATTCCGAATTCTTCACTTCCCGCCGATCAAATTTCTCCGACGAGGAGCTTCTCCTGGCATCCCGACACCCCAAGAAGAGGGCCGGAAGAAAGAAATTCAAGGAAACTCGCCACCCTGTTTACCGTGGTGTCCGCCGCCGCAATTCCGGCAAGTGGGTCTGCGAGGTCAGAGAGCCCAATAAAAAGACTAGGATTTGGCTCGGTACTTTCCCCACCGCCGAGATGGCTGCTCGGGCTCATGATGTAGCCGCCATCGCCCTCCGCGGTCGCTCTGCTTGTCTTAATTTCGCCGACTCTGTTTCCGCGCTTCCTCGCCCGGCTTCTCTTGATCCCAAGGATATTCAGAGGGCCGCGGCTGAGGCTGCAGAGGCCTTCCGCCCGCCGGAGACTGCCCCGGCGGAGGATATGTTTTGTTTCGATAACGATGAGATGCCCGGGTTTCTGGCGGACATGGCGGAGGCAATGCTGTTGCCGCCGCCCAATTGTGTGGCGACTGACCACGACGACTATGGGCCGAATTCCATGGATTTTGATGCCGACATGTCGTTGTGGAGTTACTCAATTTGA 597 56.28 MDFPDASSSSNSEFFTSRRSNFSDEELLLASRHPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSVSALPRPASLDPKDIQRAAAEAAEAFRPPETAPAEDMFCFDNDEMPGFLADMAEAMLLPPPNCVATDHDDYGPNSMDFDADMSLWSYSI 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4119634 4120230 - Cp4.1LG05g06700.1 Cpe05g00676 469881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00676 198 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Cpe05g00676 198 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Cpe05g00676 198 MobiDBLite consensus disorder prediction 26 47 - -
Cpe05g00676 198 SUPERFAMILY DNA-binding domain 50 109 IPR016177 GO:0003677
Cpe05g00676 198 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 9 144 - -
Cpe05g00676 198 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 153 198 - -
Cpe05g00676 198 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Cpe05g00676 198 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Cpe05g00676 198 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Cpe05g00676 198 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Cpe05g00676 198 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 9 144 IPR045277 GO:0003700
Cpe05g00676 198 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 153 198 IPR045277 GO:0003700
Cpe05g00676 198 CDD AP2 51 109 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00676 Cpe-Chr5:4119634 Cpe13g00177 Cpe-Chr13:1392367 8.62E-42 dispersed
Cpe09g00113 Cpe-Chr9:658358 Cpe05g00676 Cpe-Chr5:4119634 2.99E-34 dispersed
Cpe14g00129 Cpe-Chr14:693943 Cpe05g00676 Cpe-Chr5:4119634 1.72E-06 wgd
Cpe05g00305 Cpe-Chr5:1712001 Cpe05g00676 Cpe-Chr5:4119634 3.09E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49526 PF00847 AP2 9.00E-16 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00676 - - csv:101207745 282.337