Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00678 TTCTTCTTCCTCTCTCACTTTTGGATTTCCGTTCTTCGAATTCTCAGCGAAGCGGAGGCTTTAGCTTCCATTGCTCGTCTGGTTTCAGCCTCTTTGCCGCTTTTCAAGGTTCTTCTGTATATCAATATCGACCAGGATTGCAGATCACCGGCACATTGCAATCTGGTGGTTGAGAACTTTTTGAGTATCATATGTTGTGGGTCAGAAATACTTGTAGCAGTGATTAGTGAAAGACTGGCTCTAGAGGGCTACTTGGACGCTGTCCAACAAGGACTGGTGCCCCCAATGACATCTTCTAGGGTGGTTGCAGGATTAGCCCAATCTTCCTCAAACTCTGGGATTTTTTTCCAAGGAGATGGGCAGTCAAAGGGCAATGTTAAATCTCACTTGGTCTCATCTTATGGAAACTCATCAAATTCAATTCCAGGACCTGGCCACTCAAATTTGGGTCCAGTTTCTGGGGACACGAATAATGTAGTGTTAAATAGTGTGGCAAACTCAGGAATAAGTGTTGGGGGAAGTTCGTTGGTTACAGATGCAAACTCTGCACTCTCAGGTAGGCCTCATTTGCAGAGAAGTCCAAGCATGAATGCAGAATCATACATGCGATTACCTACATCGCCTATGTCTTTTACATCAAATAACGTGAGTCTCTCGGGTGCATCACTCATTGATGCATCTTCTACAGTACAGCACAATTCTCAGCAGGATCATAATGCCCCACAATTGTTGCAGACCCAACCACAGTCCCAACAAGTTGCTCCAGGTGATGCATCATTGTCAAATTCACAAACCGTCCAAGCTTCTCTACCCGTGGGTGCACGTGTTGCTGGATCTCTCATGACAGATCCCAACAGTTATTCTCAGTCACAGAAGAAACCACGCTTGGATATTAAGCAGGATGATTTCCTGCAACAGCAGATGCTACAACAGCTTCTGCAGAGACAAGATTCCATGCAGCTGCAAGGTCGTAATACACCGCAGTTACAAGCAGCATTATTTCAGCAGCAACAGAGATTACAGCAACAGCAACAGATTTTTCAGTCTTTGCCTCCTTTGCAGAGAGCTCACCTGCAACAGCAGCAGCAGATACAGTTGAGACAGCAGCTTCAACAACAGGCAATACAACCCATAAATGCTATGAAGCGGACTAATGATGGTGGTGTATGTGCTCGGCGGCTAATGCAGTACCTATACCATCAGCGTCAAAGGCCTGCTGATAATAGTATTGCCTATTGGAGGAAGTTCGTGACAGAATATTATTCCCCTCGTGCAAAGAAAAGATGGTGTTTGTCATTATATGACAATGTTGGTCATCATGCACTAGGCGTTTTCCCTCAAGCAGCTATGGATGCATGGCAGTGTGAAATTTGTGGTTCAAAGTCTGGGCGGGGATTTGAGGCTTCCTTTGAAGTGCTTCCTAGACTCAATGAGATCAAATTTGGCAGTGGAGTCATTGATGAGCTATTGTTCTTGGATATGCCACGGGAGTTCAGATATTCGTCTGGAATTATGATGTTAGAATATGGAAAAGCAGTTCAAGAGAGTGTATACGAGCAACTTCGTGTTATTCGCGAGGGTCACCTTCGTATCATATTTACTCATGAATTGAAGATATTGGCATGGGAATTTTGTGCAAGACGTCATGAAGAACTTCTACCTCGTAGGTTGGTTGCACCTCAGGTGAATCAGTTGGTCCAGGTGGCACAGAAATGCCAGAGCACTATTGCTGAAGGAGGATCCGATGGGGCTTCTCAGCAGGATTTACAAGCAAATAGTAATATGGTTTTGACAGCTGGGCAGCAGCTCGCTAAGAGTCTGGAGTTGCAATCACTTAATGATTTGGGGTTCTCCAAAAGATACGTTAGATGCTTGCAGATATCAGAGGTCGTCAACAGCATGAAAGATCTGATTGATTTCTGCAGGGTGCAGAAAACCGGACCAGTTGAGGGTCTGAAAAGTTATCCTCAGCACGCCACAGCCAAGCTGCGGATGCAAAAAAGGCAAGAGATTCAACAGGTGGCTACTGCTCAAGGTCTGCCAACCGACCGCAATAGGATGGTCGCCCTGCATCCTGGGCTGATGAACAACCAAATGAATAGCCAAAATCAAGTAATCGGCAGAGGAGCTTTGAGCAGTTCGGCCCATGCTGCTTTGGCATTGTCTAACTACCAGAATCTGCTTATGAGACAGAATTCAATGAATTCAAACAGTTCAAACCCGCTTCAGCAGGGGACATCATCATCCTTCAATAACTCAAACCAGAACCAGAGTCCTTCATCAAGCTCTCATGGTGGGACAACTGCTTTGACATCAGGACCGATGCGGAACGTGCTCGGCAGTGCTCTTTCAAGTCCTCATTTACCTTCACAACAATCCAACAACTTAGTTGCGCAAAACCATCCTCAGAGCGCTCAAGGTGGCGGCAACAATAATCAGGCCATGCAACATCAGATGATCCAGCAACTTCTCCAGATATCTAATAACAACAGTGGGGGAGGGCAACAGCAGCCACTTCCTGGTTTGAACACGAACACGAACGGAAAGATGGGGGGGTCTTATTCAGGGTTCGGCGGCAGTTCTTCAGCAGCTTCTGGCACAGCCAATGCATCCATCAGTAATACGCCGCCTGCCCCGAGCCGGAGTAATAGCTTCAAAAGCGCTTCAAATGGGGATGTATCAGCAACCGGAGGTCATAGCAGTGGGTTCAACCAAAAAAGTGAAGACTTGCCGCAAAATCTTCATTTAGAAGAGGACATAATCCAGGATATAGCCCATGATTTTACAGAAAATGGGTTTTTTAACAGTGATCTTGACGATAATATGTGCTTCGCCTGGAAAGTTCAACTAACTTAA 2856 45.76 FFFLSHFWISVLRILSEAEALASIARLVSASLPLFKVLLYINIDQDCRSPAHCNLVVENFLSIICCGSEILVAVISERLALEGYLDAVQQGLVPPMTSSRVVAGLAQSSSNSGIFFQGDGQSKGNVKSHLVSSYGNSSNSIPGPGHSNLGPVSGDTNNVVLNSVANSGISVGGSSLVTDANSALSGRPHLQRSPSMNAESYMRLPTSPMSFTSNNVSLSGASLIDASSTVQHNSQQDHNAPQLLQTQPQSQQVAPGDASLSNSQTVQASLPVGARVAGSLMTDPNSYSQSQKKPRLDIKQDDFLQQQMLQQLLQRQDSMQLQGRNTPQLQAALFQQQQRLQQQQQIFQSLPPLQRAHLQQQQQIQLRQQLQQQAIQPINAMKRTNDGGVCARRLMQYLYHQRQRPADNSIAYWRKFVTEYYSPRAKKRWCLSLYDNVGHHALGVFPQAAMDAWQCEICGSKSGRGFEASFEVLPRLNEIKFGSGVIDELLFLDMPREFRYSSGIMMLEYGKAVQESVYEQLRVIREGHLRIIFTHELKILAWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAEGGSDGASQQDLQANSNMVLTAGQQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCRVQKTGPVEGLKSYPQHATAKLRMQKRQEIQQVATAQGLPTDRNRMVALHPGLMNNQMNSQNQVIGRGALSSSAHAALALSNYQNLLMRQNSMNSNSSNPLQQGTSSSFNNSNQNQSPSSSSHGGTTALTSGPMRNVLGSALSSPHLPSQQSNNLVAQNHPQSAQGGGNNNQAMQHQMIQQLLQISNNNSGGGQQQPLPGLNTNTNGKMGGSYSGFGGSSSAASGTANASISNTPPAPSRSNSFKSASNGDVSATGGHSSGFNQKSEDLPQNLHLEEDIIQDIAHDFTENGFFNSDLDDNMCFAWKVQLT 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4134053 4142209 + Cp4.1LG05g06780.1 Cpe05g00678 469883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00678 951 MobiDBLite consensus disorder prediction 126 154 - -
Cpe05g00678 951 MobiDBLite consensus disorder prediction 732 812 - -
Cpe05g00678 951 MobiDBLite consensus disorder prediction 828 908 - -
Cpe05g00678 951 PANTHER LIM DOMAIN-BINDING PROTEIN 101 249 IPR029005 -
Cpe05g00678 951 PANTHER LIM DOMAIN-BINDING PROTEIN 274 947 IPR029005 -
Cpe05g00678 951 MobiDBLite consensus disorder prediction 245 264 - -
Cpe05g00678 951 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 101 249 - -
Cpe05g00678 951 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 274 947 - -
Cpe05g00678 951 Pfam LIM-domain binding protein 393 653 IPR029005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00678 Cpe-Chr5:4134053 Cpe14g00123 Cpe-Chr14:660969 5.30E-54 dispersed
Cpe05g00678 Cpe-Chr5:4134053 Cpe09g00106 Cpe-Chr9:607677 1.74E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00678 - - bhj:120092747 1236.86