Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00681 ATGGGTAATTCTTTTGGGTGTTCGGCTTCTGGGGAGAGATTGGTGTCGGCGGCAAGAGATGGGGATTTGGTGGAGGCTAAAATGCTTTTAGATTGCAATCCATGTCTTGCGAAATACTCTACTTTTGGTGGCCTTAATTCCCCTCTCCATTTTGCGGCTGCTAAGGGCCACAACGAGATTGTGTCCTTGTTGCTTGAAAATGGAGCTGATGTGAATTCCAGGAATTACTGTGGGCAGACAGCAGTGATGCAAGCTTGTAGATATGGACACTGGGAAGTTGTGCAAACTCTTCTAATCTTCAGATGCAATGTAATGAGAGCAGATTATCTTAGCGGTCGGTCTGCTCTCCATTTTGCTGCTGTAAATGGGCATGTGAGATGTCTAAGACTTATCGTGGCTGACTTTGTTCCGAGCGTTCCCTATGAGGCTATCGATAGCCAGACAGATCCTAGCAAAAGTGATGGTGCGAATGTGAAAAACAGATGTGAACAAGGGTACTTGACTCGTTTCATTTTGTATAGTTGCTGGCTGTGCAGTGCTTTGTCCAAGTTTATAAATAAGGCCGCTGATGGTGGCATTACTGCTCTTCACATGGCAGCACTAAATGGATATTATGATTGTGTTCATCTTCTTCTCGATCTTCATGCTAATGTTTCTGCAGTAACATTTCACTACGGGACCTCGATGGATTTGATAGGAGCTGGAAGCACTCCATTGCATTATGCAGCTTGTGGGGGTAACTTGAAGTGCTGTCAGATTCTCCTTGCAAGAGGTGCTTCTCGGACGACTTTGAATTGCAACGGGTGGCTTCCTTTAGATGTTGCCAGAATGTGGGGACGCCACTGGCTCGAACCTGTGGTAGCTCCCAATTCGGTCTCTATAATACCGGGATTTCCCACTTCCAACTACCTGTCCTTGCCTCTACTGAGTGCATTAAACATTGCCAGGGATTGCGGTTTTAAGTCTATGGGAGCGACCTCCGACGACGGGGATACTTGTGCTGTCTGTTTAGAGAGAGTATGTTCTGTGGCAGCAGAAGGATGTGGACATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGTTCGACTAGCAATATCCAATCACAAACGATCGGTTCATCAGGCTCGATTCCATGCCCCCTTTGCAGACATACAATTATATCTTTCGTAAAGTTGTCTCGTGCCACAGCAAAGGAAAAACAGCTTCATCTGTCTCTTAGCATATGCAATCCATGCATTCTTCACACCTGTGATGCTGAAGATCAGGCTTCTACTTGTACGCCAGAGATCCGAAAGAATCGTGTAGCATCGGTTTCTTCAGATGTATTTTGCCCAGTAACTTGTAGCCCATTCCCTTCTGCGGCCATTCCTCTGTGTACATGCAATGACGGTCCATGCCCAACCTTCGAGCCCCGAGACGTTGGAACAGAAGCTGAATCGCCCCGTCACTTGCAAACAACCCCAATAGACCAGGACAAATTGGGAGATCCAAGACAAGAAAGAACTAGCTGTTCAAGCATATTTTGGGGCAGAAGAAGCGGTAGCAGGGAGAATCAATGCAATTCAGAGATAAACGCTTGA 1581 46.3 MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVSLLLENGADVNSRNYCGQTAVMQACRYGHWEVVQTLLIFRCNVMRADYLSGRSALHFAAVNGHVRCLRLIVADFVPSVPYEAIDSQTDPSKSDGANVKNRCEQGYLTRFILYSCWLCSALSKFINKAADGGITALHMAALNGYYDCVHLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRTTLNCNGWLPLDVARMWGRHWLEPVVAPNSVSIIPGFPTSNYLSLPLLSALNIARDCGFKSMGATSDDGDTCAVCLERVCSVAAEGCGHELCVRCALYLCSTSNIQSQTIGSSGSIPCPLCRHTIISFVKLSRATAKEKQLHLSLSICNPCILHTCDAEDQASTCTPEIRKNRVASVSSDVFCPVTCSPFPSAAIPLCTCNDGPCPTFEPRDVGTEAESPRHLQTTPIDQDKLGDPRQERTSCSSIFWGRRSGSRENQCNSEINA 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4158761 4164122 + Cp4.1LG05g06810.1 Cpe05g00681 469886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00681 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 393 IPR013083 -
Cpe05g00681 526 SUPERFAMILY RING/U-box 328 389 - -
Cpe05g00681 526 MobiDBLite consensus disorder prediction 472 526 - -
Cpe05g00681 526 SUPERFAMILY Ankyrin repeat 14 281 IPR036770 -
Cpe05g00681 526 Gene3D - 8 172 IPR036770 -
Cpe05g00681 526 ProSiteProfiles Ankyrin repeat profile. 234 266 IPR002110 GO:0005515
Cpe05g00681 526 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Cpe05g00681 526 ProSiteProfiles Ankyrin repeat profile. 191 223 IPR002110 GO:0005515
Cpe05g00681 526 ProSitePatterns Zinc finger RING-type signature. 348 357 IPR017907 -
Cpe05g00681 526 ProSiteProfiles Ankyrin repeat region circular profile. 234 260 - -
Cpe05g00681 526 Pfam Ankyrin repeats (many copies) 234 275 IPR002110 GO:0005515
Cpe05g00681 526 PANTHER HOMEOBOX PROTEIN WARIAI 1 526 - -
Cpe05g00681 526 MobiDBLite consensus disorder prediction 500 526 - -
Cpe05g00681 526 Pfam Ankyrin repeats (3 copies) 49 132 IPR002110 GO:0005515
Cpe05g00681 526 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Cpe05g00681 526 ProSiteProfiles Zinc finger RING-type profile. 333 383 IPR001841 -
Cpe05g00681 526 SMART ring_2 333 382 IPR001841 -
Cpe05g00681 526 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 526 - -
Cpe05g00681 526 Gene3D - 177 283 IPR036770 -
Cpe05g00681 526 ProSiteProfiles Ankyrin repeat region circular profile. 191 220 - -
Cpe05g00681 526 SMART ANK_2a 234 266 IPR002110 GO:0005515
Cpe05g00681 526 SMART ANK_2a 111 141 IPR002110 GO:0005515
Cpe05g00681 526 SMART ANK_2a 191 220 IPR002110 GO:0005515
Cpe05g00681 526 SMART ANK_2a 44 73 IPR002110 GO:0005515
Cpe05g00681 526 SMART ANK_2a 77 106 IPR002110 GO:0005515
Cpe05g00681 526 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Cpe05g00681 526 Pfam Ankyrin repeat 192 222 IPR002110 GO:0005515
Cpe05g00681 526 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00681 K19044 XBAT32_33; E3 ubiquitin-protein ligase XBAT32/33 [EC:2.3.2.27] - zju:107414468 868.996
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00681 Cpe13g00045 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00681 Cpe-Chr5:4158761 Cpe07g00833 Cpe-Chr7:7560951 3.36E-155 dispersed
Cpe13g00045 Cpe-Chr13:334159 Cpe05g00681 Cpe-Chr5:4158761 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g617 Blo06g01115 . . . . . . . . . Cma02g01040 . Car02g00785 . . Cpe05g00681 . . . . . . . . Cla01g00540 Cam01g0564 Cec01g0554 Cco01g0579 Clacu01g0560 Cmu01g0532 Cre09g1977 . . . . . Csa05g00574 Chy09g00931 . . . . Bda15g00735 . Bpe12g00419 Bma08g00340 . . Cmo02g01055 . . . . . . Cpe13g00045 . . . . . . . . . . . . . . Lsi09g00584 . . Cme09g01458
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006256 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00681 Cpe_Chr05 FPKM 53.185371 58.892475 15.600157 15.415312 30.666431 27.976357 32.292347 10.730149 9.844769 10.41848