Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00691 ATGTCTTCCACCGCCCTTCTCTCTCTCCCCTTCACTCTCAGGCCCTCTCGCTTCCCCAATTCCTCTCTCTCGCCGCTCCGCCGTGCCACCTCTGTCGCGCCATTTCCAACAGTTGCGGCGGTTCGCTGCGGGTTTAAGCCTGCTTCCAAGAGTAGCAGAGGCAGTTCTACTTCTTTCGCCTATGTCGGGCCTGCTTCGGACCCGAATGTCAGCGAGTCCGACCCGAAACTCGATGACGCCTCCGATTCCCAGGTTCGGGCTCCTGGGGTCTTGTATTGGGGGCTCTTGTGGAAGCTTTTGATTAAGCACAAGCTACGGCTTCTGGTTTCTTCGCTTACTCTTGTTTGCTGCACCACTTGCACTCTTTCCATGCCGTTTTTCTCAGGTAGATTTTTTGAGGTACTTATAGGTGCAAAACCTGGGTCTTTGTGGAGGCTGCTGAGTACAGTTGGAATTTTATATGCATTGGAGCCAATATTGACGGTCTTGTTCGTCACAAACATGAATTTCATGTGGGAGAAGGTTATGTCAAGATTAAGAGCCCAGATTTTTGGAAGGTTGCTGATTCAGAAGGTGGAATTTTTTGACAGATACAAGGTTGGTGAAATTACCGGATTGTTAACTTCTGATTTGGGCTCTCTTAAAGATGTGGTGAGTGAGAATGTTTCAAGGGACCGTGGATTCAGAGCGTTCTCTGAGGCAAGCAACTCTTCACCAAGTACAAGTGATTGGAACAATATGTATATTATTTGCATTGTCCCCCCAGCTTGCACCTATTCTTGGTCTTCTGATGTTGAGTGTATCTTTTTCACTGTATACAAGCGTTCTACTATCCCTGTATTTAAAGCTCATGGATTAGCTCAAGCCTCCATGGCTGATTGTGCAACAGAGACATTCTCTGCTATTCGCACTGTGAGATCCTTTGGTGGTGAAAAGCGTCAAATGTTCAATTTTGGTCGCCAGGTTATTGCATATGAGGGTAGTGGCATATCACTTGGGACTTTTAAGTCTCTGAATGAATCCTTAACTAGAGTTGCTGTTTATATTTCGCTTATGTCATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTTTCTGTAGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTGCTGTTCAAGGATTGGTAAATACATTTGGAGATCTCCGTCGAACTTTTGCTGCTGTTGAAAGAATTAATACTGTTTTACATGAAGAGGTTGATGAAGCCCTTGCATATGGATTAGAAAAAGAGATGCAACAAAAAGAATTTAAATATAAGTTGTTATTCTCTGGCGATACTGATGAAAATAGTCAGGTGAAAACACAGTACATGTCCGACCTAAAATCTTCTAGCAATGTTATCAATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGGGCTTTTCGTATCCTTTGAGACCTGACGTTGACATTCTTAGTGATTTGAATTTAACACTTAAATGTGGAACCGTGACGGCACTAGTGGGCCCTAGTGGAGCAGGAAAGAGTACAATAGTACAGCTGTTGGCACGTTTTTATGAGCCAAAGCAAGGGCAAATAAAAGTTTCTGGTGAAGATATTCGTGCATTTGATAAGAGGGAATGGGCTCGGGCTGTTTCAATAGTGAATCAAGAACCTGTTCTGTTTTCGGTGTCTGTTGGAGAAAATATTGCATATGGACTTCCAGATGATAATGTAACAAAGGATGAGGTGATAAAGGCAGCCAGAGCTGCAAATGCTCATGACTTCATTATTGCACTTCCTCAGGGCTATGACACGCCAGTCGGTGAACGTGGAGGCCTTCTAAGTGGTGGCCAGCGACAGAGAATAGCCATTGCAAGAGCTTTGCTTAAGAATGCTCCAATCCTTATACTTGATGAGGCAACCAGTGCACTGGATGCGGTTAGCGAGCGACTCGTCCAGGATGCTCTAAACCTCTTAATGAAGGGAAGGACGACATTGGTGATTGCACATCGGTTGAGTACAGTTCAAAATGCTCATCAAATTGCATTTTGTTCTGATGGAAAAATTGTAGAGCTGGGTACTCATTTGGAACTATTGGCTCAGAAAGGTCAGTATGCTTCATTAGTTGGCACACAAAGGCTGGCATTTGAGTGA 2145 43.96 MSSTALLSLPFTLRPSRFPNSSLSPLRRATSVAPFPTVAAVRCGFKPASKSSRGSSTSFAYVGPASDPNVSESDPKLDDASDSQVRAPGVLYWGLLWKLLIKHKLRLLVSSLTLVCCTTCTLSMPFFSGRFFEVLIGAKPGSLWRLLSTVGILYALEPILTVLFVTNMNFMWEKVMSRLRAQIFGRLLIQKVEFFDRYKVGEITGLLTSDLGSLKDVVSENVSRDRGFRAFSEASNSSPSTSDWNNMYIICIVPPACTYSWSSDVECIFFTVYKRSTIPVFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFNFGRQVIAYEGSGISLGTFKSLNESLTRVAVYISLMSLYWLGGDKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRRTFAAVERINTVLHEEVDEALAYGLEKEMQQKEFKYKLLFSGDTDENSQVKTQYMSDLKSSSNVINLAWSGDICLEDVGFSYPLRPDVDILSDLNLTLKCGTVTALVGPSGAGKSTIVQLLARFYEPKQGQIKVSGEDIRAFDKREWARAVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAARAANAHDFIIALPQGYDTPVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNLLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKIVELGTHLELLAQKGQYASLVGTQRLAFE 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4236234 4243440 - Cp4.1LG05g07030.1 Cpe05g00691 469896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00691 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 709 IPR027417 -
Cpe05g00691 714 Pfam ABC transporter transmembrane region 109 222 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe05g00691 714 Pfam ABC transporter transmembrane region 268 385 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe05g00691 714 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 51 712 - -
Cpe05g00691 714 Gene3D ABC transporter type 1, transmembrane domain 247 416 IPR036640 GO:0005524|GO:0016021
Cpe05g00691 714 Gene3D ABC transporter type 1, transmembrane domain 81 224 IPR036640 GO:0005524|GO:0016021
Cpe05g00691 714 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 108 398 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe05g00691 714 Gene3D ABC transporter type 1, transmembrane domain 457 467 IPR036640 GO:0005524|GO:0016021
Cpe05g00691 714 Gene3D - 468 711 IPR027417 -
Cpe05g00691 714 Pfam ABC transporter 488 639 IPR003439 GO:0005524
Cpe05g00691 714 SUPERFAMILY ABC transporter transmembrane region 96 415 IPR036640 GO:0005524|GO:0016021
Cpe05g00691 714 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 51 712 IPR039421 -
Cpe05g00691 714 CDD ABC_MTABC3_MDL1_MDL2 470 709 - -
Cpe05g00691 714 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 470 708 IPR003439 GO:0005524
Cpe05g00691 714 CDD ABC_6TM_TAP_ABCB8_10_like 112 406 - -
Cpe05g00691 714 SMART AAA_5 497 691 IPR003593 -
Cpe05g00691 714 ProSitePatterns ABC transporters family signature. 611 625 IPR017871 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00691 Cpe-Chr5:4236234 Cpe15g00199 Cpe-Chr15:1651350 1.27E-76 dispersed
Cpe08g00693 Cpe-Chr8:5343244 Cpe05g00691 Cpe-Chr5:4236234 1.42E-11 dispersed
Cpe19g00232 Cpe-Chr19:1927509 Cpe05g00691 Cpe-Chr5:4236234 1.69E-06 dispersed
Cpe05g00691 Cpe-Chr5:4236234 Cpe20g00083 Cpe-Chr20:433845 7.95E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00691 K05657 - csv:101211598 1125.92