Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00693 ATGGTGAGAGGGAAGGTCGAGATGAAACGAATAGAAAACGCGACAAATCGTCAAGTGACTTTCTCAAAGAGACGAAATGGGCTGTTGAAGAAGGCGTATGAGCTCTCTGTTCTGTGCGATGCTGAAGTTTCTGTCATGATTTTCTCTCAGAAAGGAAGGCTTTATGAGTTCTCAAGCACCGATATACATAAGTCCATCGAGCGTTATCGATGGTATGGAAAAGATGGACAGACCAACACTCTTCGCTCCGAAGTATACATGCAGCAAATGAAGCAGGAAGCTGACATGACGGCAAAGAAAATGGAGCAACTTGAAACTTCACAAAAGAAGCTGTTGGGACGTGGGTTGGATTCGTGTTCGTTGGAGGAAATCCGAGAGATTGAAACCCAGTTGATACTTAGCTTGACTCGTATTCGAGAAAGAAAGTCTCAGCTATTCAAGGAGCAGAGAATGAAGCTGATTGAAAAGGGGAAACTGCTTATAGAGGAAAATATAAAGTTAGCTGCAAAGTGTGGTACTCAGCCATGGGAGGCAGAAGGTGGTGGTGAAGATGAGGGAGGAGGGATTATGAGTTTATTATGCACCCAAAATGCCCAACCTTCTCATATCAACACTAAATTGTTCATTGGATTGCCTTGCTCATGA 645 43.57 MVRGKVEMKRIENATNRQVTFSKRRNGLLKKAYELSVLCDAEVSVMIFSQKGRLYEFSSTDIHKSIERYRWYGKDGQTNTLRSEVYMQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLFKEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGGIMSLLCTQNAQPSHINTKLFIGLPCS 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4253722 4258064 + Cp4.1LG05g06920.1 Cpe05g00693 469898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00693 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe05g00693 214 Pfam K-box region 87 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe05g00693 214 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe05g00693 214 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Cpe05g00693 214 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Cpe05g00693 214 PANTHER MADS BOX PROTEIN 1 211 - -
Cpe05g00693 214 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe05g00693 214 PANTHER MADS-BOX PROTEIN SOC1 1 211 - -
Cpe05g00693 214 Coils Coil 87 107 - -
Cpe05g00693 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe05g00693 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe05g00693 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe05g00693 214 Gene3D - 13 106 IPR036879 GO:0003677|GO:0046983
Cpe05g00693 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe05g00693 214 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00693 Cpe13g00187 CCT
Cpe05g00693 Cpe13g00187 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00693 Cpe-Chr5:4253722 Cpe13g00187 Cpe-Chr13:1468337 2.13E-56 dispersed
Cpe13g00055 Cpe-Chr13:415744 Cpe05g00693 Cpe-Chr5:4253722 3.28E-101 wgd
Cpe05g00296 Cpe-Chr5:1658238 Cpe05g00693 Cpe-Chr5:4253722 8.04E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49527 PF01486 K-box 1.00E-17 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00693 - - csv:101212323 318.161