Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00713 ATGGAGGAAAAAGAGGGTGTTGATTTCGGATTTGCATTAAAAGTGAGCCAAGCTCCAGATAGCTTCGGGATGATGGATTCGAGACCTGAAAATACAAGCACGGACAGCGAGCCACCTCCTCCGCCTCCGCCGCCGGCGACGGCGACGGTGGAAGCAGCTCTGACGCTGGCAGGTACAGATGGAAAGAAGAAAAGAGGGAGGCCGAGAAAGTACGGACCCGATGGGACTGTAGTGCCAACATTGTCGCCAATGCCGATTTCATCATCGATTCCGCTGACGGGAGAGTTTCCGGGATGGAAACGGGGAAGGGGGAGGTCAGTAGAATCGCTCAAGAAGTCGCGGAAGTACGATTATGAGATTCCAGGTAACAAGGTTGCCTTCTTTGCTGGAGCAGATTTCACACCTCACGTGATCACTGTTAATATTGGTGAGGGTCGATTTGAGATACTTTCGTTATCTGGATCATATATGCCTTCCAAGATTGGTGGAACAAAGAGCCGATCCGGAGGGATGAGTGTCTCTTTGGCTTGCCCAGATGGCCGAGTAATGGGTGGAGGACTTTCCGGCATGCTGATAGCAGCTGGTCCAGTGCAGGTGGTGGTGGGCAGTTTCCAACCACCAGGCCACCAACAGGAGAATAAACCAAAGAAGAGCAGGATGGAACCTACATCAAATGCAATTTCACCTCCTCCCGCCATTAAACCCATAGGAGATAAAGCAGATTCTTTAGACCCAAATCCAGCTTTTACAACTTCACCAGTCAACGAAAAACCACCTTCTCCAGAAGAATCAAGAGTTGTCCTCAACCATTCAAACCATGAGCGGTATGAGCTCATTGATTCTGTGAAGGTATGA 855 49.94 MEEKEGVDFGFALKVSQAPDSFGMMDSRPENTSTDSEPPPPPPPPATATVEAALTLAGTDGKKKRGRPRKYGPDGTVVPTLSPMPISSSIPLTGEFPGWKRGRGRSVESLKKSRKYDYEIPGNKVAFFAGADFTPHVITVNIGEGRFEILSLSGSYMPSKIGGTKSRSGGMSVSLACPDGRVMGGGLSGMLIAAGPVQVVVGSFQPPGHQQENKPKKSRMEPTSNAISPPPAIKPIGDKADSLDPNPAFTTSPVNEKPPSPEESRVVLNHSNHERYELIDSVKV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4376541 4382154 - Cp4.1LG05g07180.1 Cpe05g00713 469918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00713 284 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 217 - -
Cpe05g00713 284 MobiDBLite consensus disorder prediction 1 94 - -
Cpe05g00713 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 144 236 - -
Cpe05g00713 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 9 144 - -
Cpe05g00713 284 ProSiteProfiles PPC domain profile profile. 86 225 IPR005175 -
Cpe05g00713 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 144 236 IPR039605 GO:0003680
Cpe05g00713 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 144 IPR039605 GO:0003680
Cpe05g00713 284 CDD DUF296 124 204 IPR005175 -
Cpe05g00713 284 Gene3D - 123 221 - -
Cpe05g00713 284 MobiDBLite consensus disorder prediction 34 48 - -
Cpe05g00713 284 MobiDBLite consensus disorder prediction 202 272 - -
Cpe05g00713 284 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 205 IPR005175 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00713 - - - csv:101211908 375.17
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00713 Cpe13g00070 CCT
Cpe05g00713 Cpe08g00855 CCT
Cpe05g00713 Cpe09g00137 CCT
Cpe05g00713 Cpe09g00137 ECH
Cpe05g00713 Cpe13g00070 ECH
Cpe05g00713 Cpe08g00855 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00433 Cpe-Chr5:2472532 Cpe05g00713 Cpe-Chr5:4376541 2.20E-18 dispersed
Cpe05g00713 Cpe-Chr5:4376541 Cpe08g00488 Cpe-Chr8:3132250 4.78E-36 dispersed
Cpe13g00201 Cpe-Chr13:1547397 Cpe05g00713 Cpe-Chr5:4376541 4.88E-16 dispersed
Cpe13g00070 Cpe-Chr13:546126 Cpe05g00713 Cpe-Chr5:4376541 3.17E-134 wgd
Cpe05g00281 Cpe-Chr5:1584860 Cpe05g00713 Cpe-Chr5:4376541 1.14E-19 wgd
Cpe05g00713 Cpe-Chr5:4376541 Cpe09g00137 Cpe-Chr9:808107 1.69E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g329 Blo02g01107 Blo03g00211 . Bda08g00520 Bpe05g00642 Bpe07g00112 . . . . Cma02g01007 Cma15g01221 Car02g00752 Car15g01102 . . Cpe05g00713 . . . . . . . . . . . . . . Cone8ag0311 Cone12ag0311 Cone6ag0774 . . Csa05g00288 Chy09g01218 . . . . . . . Bma05g00817 Bma12g00188 . Cmo02g01022 Cmo15g01287 . . . . Cpe08g00855 . Bhi12g00246 . . . . . Lcy12g1658 Cla01g00271 Cam01g0279 Cec01g0271 Cco01g0286 Clacu01g0278 Cmu01g0266 Cre09g2242 Lsi09g00265 . . Cme09g01755
Vvi16g499 . . . . . Bpe07g00968 . . . Cmo18g01215 Cma02g01007 Cma15g01381 Car02g00752 Car15g01247 . Cpe05g00713 . Bhi01g01246 Tan01g0351 . . . . . Cla01g00501 Cam01g0520 Cec01g0513 Cco01g0537 Clacu01g0522 Cmu01g0495 Cre09g2015 . . . . Lsi05g01307 Csa05g00539 Chy09g01143 Cme06g00921 . . . Bda15g00752 . Bpe12g00400 . Bma12g01151 . Cmo02g01022 Cmo15g01444 . Cma18g01194 . Car18g01102 Cpe09g00137 Cpe13g00070 Bhi12g00573 . . . Hepe06g1336 . . . . . . . . . Lsi09g00539 Csa03g01634 Chy06g00871 Cme09g01500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013255 0 1 0 0 0 0 2 0 0 1 0 0 2 1 1 2 0 1 2 1 1 0 1 1 1 1 1 3 3 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00713 Cpe_Chr05 FPKM 11.849722 12.464148 8.645583 9.07206 20.67605 19.37772 21.31543 14.122574 13.770078 13.367878