Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00741 ATGGGGTGGCAGACAAGTGAAAAGCTTGTTCCATATAAGAAGATGTTTGCTCAGAGAAAGGTACAGCATGATGTTGTGACTCTTGAAGCAGATGATGTTGCAAATGCAATAATAGAAGAGGTTACAAGGAAACTAAACGGTCTGTCCTCAAGAATATCAGCTCATGCACCTAGATATTGTACGGTCTATGCCATTTCAAAAGGAAAATTAGCCTCAATACGGCCACCTGATATGGAGACAAGCGTGAGCATTAAAGATGATTCGAGTGAAGCAAGTTCTGCACATAGCTACTCAAGCTATTCTTCTAGCTCGCTTACAGCTCTTTCGACCATCAATCAGTCTCTTCTTACTACGAAAACTAGCCCCATTGTAGCCAACCATTCTCGATGCCATTCCGTTGATATTGAGGAGCCGGTGGATCGCCTTCGATCCTCTCCCAATGTTTCATATTGTGCACAAACATTGAGTCGAGCCTCTAGTTGTAAAAGCTTGCCAACAGATTACAAGTCATGGGTTCCTGATGAAGCTTCATCATCAGGCACATTCAATGATTATGTTTCATGTGAAAGTCAGGCGGATGTCAACTTTGAGCTTGAAAAGTTGAGAATTGAACTAAGACATGCAAGAGAAATGTACGCAATTGCTGAACAAGAGACGGCCAATGCCACTTTGAAGAATTTGCAAGGGAAAAGAGCAAATGTTGAAGCTTTGAGAAGAGAAGCAAAATTTGTAAGAGAAGGTGCTGAAAGAGAGGGTATCTATAGGAAGGAAGCAGAGACGAAAGCTGTTCAAGATGCCAAAGAGAAGGGAAAGCATGAGAGTGCTCTTCATGGATATCTGCAGCAATACCAACATTTTGAATGGAATGATATTGTATCTGCTGCATCATCTTTCTCTGAGGATCTTATGATTGGAATGGGAGCACATGGAGCAGTTTATAAGTGTAATTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCTAGAGATGATCACAAGAACACCCAATTTCTTCGGGAGCTTGAAATCTTGAGCAAAATTCATCATCCCCATTTACTACTACTCCTTGGTGCGTGTCCGGACAAGCACTGCCTGGTTTATGAGTACATGGAAAACGGTAGCCTAGAGGATAGGTTGTACCGCAGAGGCAACACACCTGCAATCCCATGGTATGAGAGGTATAGGATTGCTTGGGAAATAGCCTCAGCTCTTGTCTTTCTACACAGCTCAAAGCCGAAACCGATAATCCACCGTGATCTTAAGCCTGCAAACATCTTACTCGACCGAAACCTCGTGAGCAAAATCGGCGACGTCGGTCTATCTACTATGCTTAATTCAGATCCTTTAATGTCTACTGCATTCAAGGATAGTGGACTAGTTGGAACTCTATGTTATATAGATCCTGAGTATCAACGAACTGGATTAATCTCACCTAAGTCTGATGTTTATGCTTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAGCCAGCAGTAGCATTAACCCATGTGGTGGAAACTGCCGTTGAGAGCCGCTCTTCAATAAAGGTTCTTGATATTAAGGCTGGGCATTGGCCTATTGAAGAGACGTATGAATTGGCGAGATTAGGACTTTGGTGTGCAGAGCTACAACGCAAAGATAGGCCCAACTTAAAGGATCAAGTACTTCCCTTGTTAGTGAGACTCAGAAAGGTTGCTGATGAGGCTCGCAATTCGGCCTCCAGAGTCCCACCTGCAATTCCTAACCATTTCATCTGTCCAATTCTTCTCGACGTGATGAATGACCCTTGTGTTACGGCAGATGGATACACATACGATCGTCGAACGATAGAGAAATGGTTCCAAGAGAACGATATTTCACCGACGACGAAGTTGCCACTGCCAGATAAGAATTTAATACCTAATCACGGTCTTCTGTCTTCAATTATGGAGTGGAACTCCAGAAAAAACTAA 1956 42.89 MGWQTSEKLVPYKKMFAQRKVQHDVVTLEADDVANAIIEEVTRKLNGLSSRISAHAPRYCTVYAISKGKLASIRPPDMETSVSIKDDSSEASSAHSYSSYSSSSLTALSTINQSLLTTKTSPIVANHSRCHSVDIEEPVDRLRSSPNVSYCAQTLSRASSCKSLPTDYKSWVPDEASSSGTFNDYVSCESQADVNFELEKLRIELRHAREMYAIAEQETANATLKNLQGKRANVEALRREAKFVREGAEREGIYRKEAETKAVQDAKEKGKHESALHGYLQQYQHFEWNDIVSAASSFSEDLMIGMGAHGAVYKCNLHHTTVAVKVLHSRDDHKNTQFLRELEILSKIHHPHLLLLLGACPDKHCLVYEYMENGSLEDRLYRRGNTPAIPWYERYRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDRNLVSKIGDVGLSTMLNSDPLMSTAFKDSGLVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAVALTHVVETAVESRSSIKVLDIKAGHWPIEETYELARLGLWCAELQRKDRPNLKDQVLPLLVRLRKVADEARNSASRVPPAIPNHFICPILLDVMNDPCVTADGYTYDRRTIEKWFQENDISPTTKLPLPDKNLIPNHGLLSSIMEWNSRKN 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4536729 4544447 - Cp4.1LG05g07460.1 Cpe05g00741 469946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00741 651 ProSiteProfiles U-box domain profile. 580 651 IPR003613 GO:0004842|GO:0016567
Cpe05g00741 651 Coils Coil 220 240 - -
Cpe05g00741 651 Coils Coil 198 218 - -
Cpe05g00741 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 580 651 IPR013083 -
Cpe05g00741 651 CDD RING-Ubox_WDSUB1_like 585 625 - -
Cpe05g00741 651 Pfam U-box domain 581 650 IPR003613 GO:0004842|GO:0016567
Cpe05g00741 651 Pfam Protein kinase domain 302 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g00741 651 SMART Ubox_2 584 646 IPR003613 GO:0004842|GO:0016567
Cpe05g00741 651 ProSiteProfiles Protein kinase domain profile. 298 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g00741 651 SUPERFAMILY RING/U-box 569 649 - -
Cpe05g00741 651 ProSitePatterns Protein kinases ATP-binding region signature. 304 325 IPR017441 GO:0005524
Cpe05g00741 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Cpe05g00741 651 PANTHER OS02G0152300 PROTEIN 1 647 - -
Cpe05g00741 651 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 1 647 - -
Cpe05g00741 651 SMART serkin_6 298 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g00741 651 Gene3D Transferase(Phosphotransferase) domain 1 371 577 - -
Cpe05g00741 651 Gene3D Phosphorylase Kinase; domain 1 267 370 - -
Cpe05g00741 651 SUPERFAMILY Protein kinase-like (PK-like) 276 556 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00741 Cpe-Chr5:4536729 Cpe11g01178 Cpe-Chr11:9672096 7.41E-128 dispersed
Cpe13g00095 Cpe-Chr13:682750 Cpe05g00741 Cpe-Chr5:4536729 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62414 PF00069 Pkinase 4.90E-40 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00741 - - csv:101217665 993.03