Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00757 ATGGATTTTGGGTTCAATTCACTTCAAAATCACCATATTCGCTCGAGAAATGGCCTGAATTTGGAGCCGGCGGAGGAAGCTAGTTCCGCCGCCGTGGATTTCGACGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGTGGTGGAGGAGAGGTTGAGAGGGAACATATGTTTGACAAAGTGGTGACGCCGAGTGATGTTGGGAAATTGAATCGGTTAGTGATTCCAAAGCAACATGCTGAGAGGTTTTTCCCATTAGATTCATCAACAAATGAAAAGGGTTTGCTTTTAAATTTCGAAGATCGTCACGGGAAATCGTGGCGGTTTCGTTACTCTTACTGGAATAGTAGCCAGAGTTATGTTATGACTAAAGGTTGGAGTCGATTCGTTAAAGAGAAGCGTCTCGACGCCGGTGATGTCGTGTCGTTTCAACGTGGAGTTGGTGAAATTGGAAGAGATCGTCTTTACATTGACTGGCGTCGTCGCCCGGAGCTTCCAATTGACCACCACCACCACCACCATCACCACCACCCTATCGGCATCCGACCAAGCATCGTCATGCCCACCACCGCTTGGGGGTCATTAGTATGGCAACCACTCGGCGTAACAGCAACTGGATATCATCATCCAGCTACCGTAGCACCGCAGGACCACACACACATATCGCGAATAAACAACAACAACAACAACAGCAGCAACGTTAACGTTATGTATGATAGGAATAGAGGGTATTGTCCTTACGGATATGGGAGTGTCGAATCATCATCGTCATCAGAAATGGTGTTTTTTGGGAGAGCCTCAAGATTAGGGGATGGTTTGGAGGGGAAGAATGAGATGCAGCCGGAGTATATGAGTAGTAGCGGCGGTGGCGGTGGCGGTGGTGGTGGTGGTGGTGGTTCGATGGCGGTCCAAGAGAGTTACAGCGAAGAAGATACGCCCGTGAAGAGATCAAGGCTGAGGCTTTTTGGTGTAAATATGGAGATGGAGTGCCCAATAATGTCATCTTCTTCAGATGAATGTGACTTATTACTGTCTTCTTCTTCTAATTCAAACCCCAAAACCACCGCTCCTTCCAATTGA 1080 48.43 MDFGFNSLQNHHIRSRNGLNLEPAEEASSAAVDFDGGGGGGGGGGGGGGGEVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNEKGLLLNFEDRHGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDVVSFQRGVGEIGRDRLYIDWRRRPELPIDHHHHHHHHHPIGIRPSIVMPTTAWGSLVWQPLGVTATGYHHPATVAPQDHTHISRINNNNNNSSNVNVMYDRNRGYCPYGYGSVESSSSSEMVFFGRASRLGDGLEGKNEMQPEYMSSSGGGGGGGGGGGGSMAVQESYSEEDTPVKRSRLRLFGVNMEMECPIMSSSSDECDLLLSSSSNSNPKTTAPSN 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4687070 4688149 + Cp4.1LG05g07530.1 Cpe05g00757 469962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00757 359 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 346 IPR044800 GO:0003700
Cpe05g00757 359 MobiDBLite consensus disorder prediction 275 312 - -
Cpe05g00757 359 ProSiteProfiles B3 DNA-binding domain profile. 58 163 IPR003340 GO:0003677
Cpe05g00757 359 MobiDBLite consensus disorder prediction 339 359 - -
Cpe05g00757 359 CDD B3_DNA 56 145 IPR003340 GO:0003677
Cpe05g00757 359 Gene3D - 52 176 IPR015300 -
Cpe05g00757 359 SUPERFAMILY DNA-binding pseudobarrel domain 55 164 IPR015300 -
Cpe05g00757 359 MobiDBLite consensus disorder prediction 24 53 - -
Cpe05g00757 359 Pfam B3 DNA binding domain 58 162 IPR003340 GO:0003677
Cpe05g00757 359 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 38 346 - -
Cpe05g00757 359 SMART B3_2 58 163 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00663 Cpe-Chr1:3870288 Cpe05g00757 Cpe-Chr5:4687070 3.07E-29 dispersed
Cpe05g00757 Cpe-Chr5:4687070 Cpe12g00470 Cpe-Chr12:4456795 6.66E-68 dispersed
Cpe05g00757 Cpe-Chr5:4687070 Cpe14g00507 Cpe-Chr14:3214566 1.81E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49530 PF02362 B3 1.50E-29 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00757 - - cpep:111796005 611.298