Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00759 ATGATACGGACTGTTGAGCTAAAAGTCAGGATGTGCTGCCGCGGCTGTGAACGGGTTGTTAAAGATGCGATCTACAAACTTAGAGGAGTTGATTCAGTTGAGGTGAACTTGGAGCTGGAGAAGGTGACGGTGATTGGATATGTCGATCGAAACAAGGTGTTGAAGGTGGTTCGAAGGGCCGGGAAGAGGGCAGAGTTTTGGCCGTATCCAGAGCCACCGTTATACTTCACGTCTGCTGCTGATTACTTTAAAGATACAACTCGTGAGTTCAAAGAGAGCTATAACTATTACAGGCATGGATATAATATCGGAGAGAAGCATGGAACGATTCCGATATCTCATCGAGGCGACGACAAAGTGAGCAACATGTTCAATGATGACAATGTCAATGCTTGTAATGTCATGTAA 408 45.1 MIRTVELKVRMCCRGCERVVKDAIYKLRGVDSVEVNLELEKVTVIGYVDRNKVLKVVRRAGKRAEFWPYPEPPLYFTSAADYFKDTTREFKESYNYYRHGYNIGEKHGTIPISHRGDDKVSNMFNDDNVNACNVM 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4695579 4698155 + Cp4.1LG05g07520.1 Cpe05g00759 469964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00759 135 Gene3D - 2 65 - -
Cpe05g00759 135 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 2 135 IPR045181 GO:0046872
Cpe05g00759 135 Pfam Heavy-metal-associated domain 8 62 IPR006121 GO:0046872
Cpe05g00759 135 CDD HMA 6 65 IPR006121 GO:0046872
Cpe05g00759 135 SUPERFAMILY HMA, heavy metal-associated domain 2 68 IPR036163 GO:0046872
Cpe05g00759 135 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 44 2 135 - -
Cpe05g00759 135 ProSiteProfiles Heavy-metal-associated domain profile. 11 66 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00759 - - - csv:101210939 270.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00016 Cpe-Chr2:100693 Cpe05g00759 Cpe-Chr5:4695579 1.40E-13 dispersed
Cpe05g00759 Cpe-Chr5:4695579 Cpe14g00332 Cpe-Chr14:2014080 1.91E-32 dispersed
Cpe05g00759 Cpe-Chr5:4695579 Cpe10g00575 Cpe-Chr10:3353347 1.27E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g278 . . . . . . Bma07g01048 . . . . . . Car15g01202 . . Cpe05g00759 . . . . . . . . . . . . . . . . . . . Csa05g00144 . . . Blo19g00129 Bda07g00162 Bda09g00627 Bpe08g00914 Bpe11g00382 . . . . . . . . . . . . . . . . . . Cla01g00127 Cam01g0129 Cec01g0130 Cco01g0131 Clacu01g0125 Cmu01g0127 Cre09g2378 Lsi09g00117 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007419 3 2 0 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00759 Cpe_Chr05 FPKM 25.46863 26.30151 29.90103 30.617731 40.454109 35.765842 41.92054 21.457764 22.35783 23.477451