Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00788 ATGACTTTTCATGGAGGAGATTCGTATACGCAGTCTTGTGTTTCCGCTCAAGGTCGTGGAAGAGATGATCTGTATATGGAGCTATGGAGGGCTTGTGCAGGTCCACTGGTTGATATACCTCGAGTTGATGAGAAAGTCTTCTATTTCCCTCAGGGGCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTTCCTCGAAGATTCTCTGTCGCGTGATTTATATAGAGCCGCGGGCAGATCATGAATCGGATGAGGTTTATGCGCAAATAACTTTGTTGCCGGAAGCAAATCAAAGTGAGCCTAGAAGTTTAGATCCATGCCCTCCTGAACCTGTCAAACCAGTTGTTCACTCGTTCTGTAAGGTTTTAACTGCTTCTGATACCAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCGAACGAGTGCTTACCTCCTTTGGACATGACTCAGGCTACACCAACTCAGGATCTGGTCGCCAAGGATCTTCATGGATATGAGTGGCGATTTAAACATATTTTTAGAGGTCAGCCACGAAGGCACCTGTTAACGACGGGGTGGAGTACATTTGTTACATCTAAAAGATTAACTGCTGGAGATTCCTTTGTATTCTTGAGGGGAGACAATGGACAGTTGCGTGTTGGGGTGAGGCGTCGTGCTCAACAGCAAAGCAGCATGCCACCATCTGTGATATCGAGTCAGAGCATGCACCTAGGAGTGCTCGCAACTGCATCTCATGCTGTTACAACCCAAACCCGTTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAATACTTGGAAGCAGTCAATTATAAATTTTCTCTTGGCATGAGATTCAACATGCGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTGGAGATATTTCACCTCATTGGGCCAATTCAAGCTGGAGATCACTAAGAGTGAGCTACTCTTACTCAATTCCCCACCGGGAACATCATTATGGTGCTGATTTGACTAAGTCAGCACATTGGGATTCTGGATTGGCACAATCTCATGATGGTAAACAGTGCGGTAATGCAACTGAGAGCAGAAAAGGTGAAAATAATGAACTGTGTCATCATAGTGAGATAGATACTATCAGCAACAGTACATGTGTCTCAAGAACACCGACTGATGGGACCTGGCTATTTTCTACCCAATCCAATGGTTATAAAGACCCAGTAAATGACACAGCACAGGATTATAAAACTGTACCTGTCTGTGGTTGGTCTATTCTGTCAGGACCTTCAAAGGTAAGTGATGATCAAATACTTGATCCCACTGAAAATGGGTGGAAAGGCGAAACTGTAGCTAGTTGTAGATTGTTTGGCATTGATCTCAATCATTTTGCTAAACTTCCTGCTGAGAAAGCATCTTCTCAACCGAGCAGTATGTCTAGTGACACAGATGGGCGCATCAGCACCTTGTCATTGGCTCAGTCCGATTCAAAATCTGACAACATAGAGGCCTCTATAGAAAGAAAGTTAGAGCCATTACAAGCATCTCTGAAGGAGACTCAAAGTAGCTCAACTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGAATGGCCGTGGGTAGGGCAGTAGACTTAACCATCTTAGAAGGCTATGACCAATTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTCTGCACGAGGTAAGTGGGAGATTGTATATACTGACGATGAAGGGGATATGATGCTTGTTGGAGACGATCCATGGGAAGAATTCTGTAACATGGTGAGAAGAATTTTTATATGCTCTAGGGAGCAAGTGAAAAAGATGAGCTCAGGAAGCAAGCAGCTGGCGTCAATAGAAGTTGAAGGGGCAGTAGTAATCCCCGACTCCCCTGCAATTTGA 1959 44.0 MTFHGGDSYTQSCVSAQGRGRDDLYMELWRACAGPLVDIPRVDEKVFYFPQGHMEQLEASTNLELNKRIPLFNLSSKILCRVIYIEPRADHESDEVYAQITLLPEANQSEPRSLDPCPPEPVKPVVHSFCKVLTASDTSTHGGFSVLRKHANECLPPLDMTQATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLTAGDSFVFLRGDNGQLRVGVRRRAQQQSSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNYKFSLGMRFNMRFEGEDSPERRFSGTIIGAGDISPHWANSSWRSLRVSYSYSIPHREHHYGADLTKSAHWDSGLAQSHDGKQCGNATESRKGENNELCHHSEIDTISNSTCVSRTPTDGTWLFSTQSNGYKDPVNDTAQDYKTVPVCGWSILSGPSKVSDDQILDPTENGWKGETVASCRLFGIDLNHFAKLPAEKASSQPSSMSSDTDGRISTLSLAQSDSKSDNIEASIERKLEPLQASLKETQSSSTNTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLSARGKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKKMSSGSKQLASIEVEGAVVIPDSPAI 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4895382 4903799 + Cp4.1LG05g07840.1 Cpe05g00788 469993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00788 652 Gene3D - 290 347 - -
Cpe05g00788 652 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 351 639 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe05g00788 652 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 337 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe05g00788 652 SMART B3_2 129 231 IPR003340 GO:0003677
Cpe05g00788 652 CDD B3_DNA 127 229 IPR003340 GO:0003677
Cpe05g00788 652 Gene3D - 126 231 IPR015300 -
Cpe05g00788 652 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Cpe05g00788 652 Gene3D - 536 629 - -
Cpe05g00788 652 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
Cpe05g00788 652 Pfam AUX/IAA family 532 619 IPR033389 -
Cpe05g00788 652 ProSiteProfiles PB1 domain profile. 541 622 IPR000270 GO:0005515
Cpe05g00788 652 MobiDBLite consensus disorder prediction 482 514 - -
Cpe05g00788 652 SUPERFAMILY CAD & PB1 domains 535 617 - -
Cpe05g00788 652 Pfam Auxin response factor 255 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe05g00788 652 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Cpe05g00788 652 MobiDBLite consensus disorder prediction 484 513 - -
Cpe05g00788 652 PANTHER AUXIN RESPONSE FACTOR 9 351 639 - -
Cpe05g00788 652 PANTHER AUXIN RESPONSE FACTOR 9 19 337 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00608 Cpe-Chr1:3504405 Cpe05g00788 Cpe-Chr5:4895382 0 dispersed
Cpe05g00788 Cpe-Chr5:4895382 Cpe14g00449 Cpe-Chr14:2820937 0 dispersed
Cpe13g00097 Cpe-Chr13:707914 Cpe05g00788 Cpe-Chr5:4895382 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49533 PF02309 AUX_IAA 1.70E-12 CL0072 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00788 K14486 - csv:101209208 1078.54