Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00816 ATGTTCATCGCATTGCATTTGGGGGAAAACGCAATCATTCGAATGAAAGAAGCGGATAAGAACTTGGATCCTCAACTATGGCATGCCTGTGCGGGAGGCATGGTCCAGATGCCTGCTATTAACTCCAAGGTCTTTTACTTCCCTCAGGGTCATGCCGAGCACGCTCAGGCCGCCGTCGATTTCACTTCTTCACTTAGAATCCCGCCGCTTATTCCATGTAGAGTGCTCGCCGTCAAGTTCTTGGCTGATCATGAAACGGATGAAGTTTATGCGAATGTACGACTGGTTCCACTGGCGAATAACGAAATTAATTGCGAGGAAGAGGGTGGTTTTGGGAGTAATGGGTCTGAGAATAACATGGAGAAACCGGCTTCCTTTGCCAAAACGTTGACCCAATCCGATGCTAACAACGGCGGTGGGTTCTCGGTTCCGAGGTACTGTGCGGAGACGATATTTCCGAGGCTGGATTACACGGCGGATCCGCCGGTTCAGACGGTGATTGCTAAGGATGTCCACGGCGAGGTTTGGAAGTTTCGGCATATTTACAGGGGGACGCCTCGTCGGCATTTATTAACTACTGGGTGGAGTAGTTTTGTCAATCAGAAGAAGCTTGTCGCCGGCGATTCGATTGTTTTTCTGAGATCCAAAAATGGCGACCTCTGTGTTGGAATCCGGCGAGCCAAACGGGCAATTGGGTGTGCTGCTGATCACCCATATGGCTGGAATCCCGGCGGTGGAAATAGCATCCCACCCTACGGTGGGTTGACGATGTTTCTGAGAGATGAGGACAACAAGTTGAGTAGAAAAGGGTCTTTGAGTTCTAATGGTGGTGGGAGTTTGAGGGGAAAAGGCAAAGTTAGGCCAGAATCAGTGATTGAAGCGGCGGCGCTGGCAGCGAGTGGGCAGGCGTTTGAGGTGGTTTATTACCCACGCGCCAGCACGCCGGAGTTCTGTGTTAAGGCCTCATCGGTTCGAGCCGCCATGAGAATCCAGTGGTGCTCTGGTATGAGGTTCAAGATGCCATTTGAAACTGAGGATTCTTCTCGGATTAGTTGGTTTATGGGCACCATTTCCTCTGTTCAAGTTGCTGATCCTATCCGCTGGCCGAATTCTCCATGGCGGCTTCTTCAGGTGACGTGGGACGAGCCAGATTTGCTACAGAACGTGAAGCGTGTTAGCCCATGGTTGGTCGAACTGGTATCGAACATGCCCGTCATTCAACTATCACCATTCTCTCCACCAAGAAAGAAGTTTCGACTACCTCAACACCCCGACTTTCCCCTCGACAGCCAATTCCAATTGTCGTCGTTTCCAAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTCCTCAGATTTCCATCTCAACAACAAACTTCAACTTGGGCTGCTTCCATCCAGTTTTCAGCAGCTTGATTTTCACTCCAGAATTTCCCATAGATCGGTTACAGACCACAGAGGCAGCGGCAGTCAGAACTCGTCGGCACTGCTCAATGCGGAGAACACTGGTCCGAAGTTGGAACGATCCGATTCTGTGAAGAAGTATCAGTTTTTACTCTTTGGTCAACCTATACTCACTGAACAGCAAATCACACGCAGCTCTTCCGGTGACGTTCACTCACCTCGGACCGAGAAAAGTTCCTTAGACGTGAATTTGGAGAGAGTGAAATTCCTATCTGATGGCTCAGGATACACTTTCAAGCAGCAGCAGATATCTCCAAACAAGTCACCGGGAGCTGGATTTCCATGGTACCAGGGTTATCAAGCCACTGAACTCGGCCTAGACATCGGTCACTGCAAGGTATTCATGGAGTCAGAAGATGTAGGCCGAACGCTTAACCTTTCGGTCATTGGCTCGTATGAAGAACTATACCGGAGGCTGGCAAACATGTTCGGAATGGAGAAACCAGACATTCTTAGCCATGTCCTTTACCAAGATGCAACAGGTGCTGTCAAACAAGCTGGAGACAAACCATTCAGTGATTTTATCAAAACAGCTAGAAGACTGACGATTCTAACTGACTCGGGGTCGGACAAGATGGTCGGAAGGAGATTGATGGATGGACTGCGAAGTGGTGAAAATGGATTAGATTCCTCAAACAAGACGGGCCCCTTGAGCATATTTGCATAG 2193 49.2 MFIALHLGENAIIRMKEADKNLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQAAVDFTSSLRIPPLIPCRVLAVKFLADHETDEVYANVRLVPLANNEINCEEEGGFGSNGSENNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCAADHPYGWNPGGGNSIPPYGGLTMFLRDEDNKLSRKGSLSSNGGGSLRGKGKVRPESVIEAAALAASGQAFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDSQFQLSSFPSNTLRPSSPMCCLSDNTSVGIQGARHTQFGISSSDFHLNNKLQLGLLPSSFQQLDFHSRISHRSVTDHRGSGSQNSSALLNAENTGPKLERSDSVKKYQFLLFGQPILTEQQITRSSSGDVHSPRTEKSSLDVNLERVKFLSDGSGYTFKQQQISPNKSPGAGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDSGSDKMVGRRLMDGLRSGENGLDSSNKTGPLSIFA 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5047352 5052094 + Cp4.1LG05g08160.1 Cpe05g00816 470021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00816 730 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 706 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe05g00816 730 CDD B3_DNA 125 226 IPR003340 GO:0003677
Cpe05g00816 730 SUPERFAMILY DNA-binding pseudobarrel domain 121 231 IPR015300 -
Cpe05g00816 730 PANTHER AUXIN RESPONSE FACTOR 16 706 - -
Cpe05g00816 730 MobiDBLite consensus disorder prediction 505 521 - -
Cpe05g00816 730 Pfam Auxin response factor 294 377 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe05g00816 730 Gene3D - 332 405 - -
Cpe05g00816 730 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Cpe05g00816 730 SMART B3_2 126 228 IPR003340 GO:0003677
Cpe05g00816 730 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Cpe05g00816 730 Gene3D - 124 228 IPR015300 -
Cpe05g00816 730 ProSiteProfiles PB1 domain profile. 617 697 IPR000270 GO:0005515
Cpe05g00816 730 Gene3D - 617 702 - -
Cpe05g00816 730 MobiDBLite consensus disorder prediction 500 529 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02236 Cpe-Chr1:19019574 Cpe05g00816 Cpe-Chr5:5047352 0 dispersed
Cpe05g00816 Cpe-Chr5:5047352 Cpe19g00413 Cpe-Chr19:3647403 0 dispersed
Cpe16g00530 Cpe-Chr16:6226242 Cpe05g00816 Cpe-Chr5:5047352 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49535 PF02362 B3 7.40E-22 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00816 - - bhj:120088819 1338.94