Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00818 ATGGCCATGGCTATAGCTCATCACAGAGAGAGTAGTAGTGGGAGCTTAACCAGGCATCTTGACAGTACTGGAAAGTACGTTCGATACACATCAGAGCAGGTTGAGGCTCTTGAGCGAGTCTATGCTGAATGCCCAAAGCCAAGTTCTCTTCGAAGGCAGCAGCTCATCCGGGAATGCCCAATTCTTTCAAACATAGAGCCCAAACAGATCAAAGTTTGGTTTCAGAATCGGAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAAACAGTGAACAGGAAATTGAATGCCATGAACAAATTGTTGATGGAGGAGAATGATCGGCTGCAGAAACAGGTGTCCCAATTGGTGTGTGAAAATGGGTTTATGCGGCAGCAATTACAAACAGTGCCAGCAGCAACCACTGATGCAAGCTGTGATTCTGTGGTCACCACTCCTCAACCCTCTAAAACAGATGCTAATAACCCAGCTGGGCTCCTCTCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCCATTTCACAAAGTTGCGGCGGAGTGGCAGCAAGAGCCTGTGGTCTTGTAAGTTTGGAGCCTGCAAAGATTGCAGAGATCCTTAAAGATCGTCCATCGTGGTTTCGTGATTGTCGAAGCCTTGAGGTTTTTACTATGTTTCCAGCTGGAAATGGTGGAACAATTGAACTTGTCTACACACAGGTATACGCTCCAACTACCCTCGCTCCTGCACGTGATTTTTGGACGCTAAGATACACAATAACTTTGGAAAATGGCAGCCTTGTGGTCTGTGAGAGATCTCTCTCGGGTTCTGGTGCTGGTCCTAGTCCAGCTGCTGCTGCTCAGTTTGTTAGAGCTGAGATGCTCCCAAGTGGTTATCTGATTCGACCATGTGAGGGCGGTGGGTCCATCATACATATAGTAGATCACCTAAATCTTGAGGCGTGGAATGTTCCTGAGGTGCTGCGACCGCTTTATGAATCGTCGAAAGTCGTGGCTCAGAACATGACTATTGCAGCACTACGGTACGTTAGGCAAATAGCTCAGGAGACGAGCGGTGAAGTGGTTTATGGTTTGGGCCGACAACCTGCTGTTCTCCGAACCTTTAGCCAAAGATTGAGCAGGGGTTTTAATGATTTGGTGAATGGATTCAATGACAACGGATGGTCATTGATTAATTGTGAAGGTGCTGAGGATGTCGTACTTGCTGTGAATTCTACGAAAAATTTCGGCACAACATCCAACCCCGTGAACTCCTTAACGTACCCTGGGGGAGTTCTTTGTGCTAAGGCTTCCATGCTACTCCAAAATGTTCCTCCTGCCGTGCTAGTTCGTTTCTTGAGAGAACACCGTTCCGAATGGGCTGATTTCAACATTGATGCATACTCTGCAGCAACCCTTAAAGCTAATTCGTACGCATATCCAGGGATGAGGCCGACAAGGTTTACCGGGAGTCAAATCATCATGCCACTTGGCCATACAATCGAGCACGAAGAGTTGCTTGAAGTTATTCGTCTTGAAGGACATCCTATGGTACAAGAAGACGCTTTTGTTTCAAGGGACATTCATCTTCTTCAGGTTGATAGCCGACTATTTGATTATCGTACGAATTTACAATTAGGAACGGAGTTGATCAGTTCAGATAGCTTGGAAAGCGATTCCCTTTTGAAAAATCTCTGGAATCATCAGGATGCAATATTGTGCTGTTCGTTAAAGGGATTTGCGTACTTACCTGGAGGAATCTGTGCATCGACAATGGGGCGACACATTTCGTACGAACAAGCGATTGCATGGAAAGTCCTCGAGGCAGACGAGACGACGGTCCATTGCCTTGCCTTCTCCTTCATAAACTGGTCTTTTGTTTGA 1944 46.97 MAMAIAHHRESSSGSLTRHLDSTGKYVRYTSEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTVPAATTDASCDSVVTTPQPSKTDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLEPAKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTITLENGSLVVCERSLSGSGAGPSPAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQNMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDLVNGFNDNGWSLINCEGAEDVVLAVNSTKNFGTTSNPVNSLTYPGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNIDAYSAATLKANSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHPMVQEDAFVSRDIHLLQVDSRLFDYRTNLQLGTELISSDSLESDSLLKNLWNHQDAILCCSLKGFAYLPGGICASTMGRHISYEQAIAWKVLEADETTVHCLAFSFINWSFV 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5072409 5078039 - Cp4.1LG05g08290.1 Cpe05g00818 470023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00818 647 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Cpe05g00818 647 Gene3D - 19 91 - -
Cpe05g00818 647 CDD START_ArGLABRA2_like 158 374 - -
Cpe05g00818 647 Pfam MEKHLA domain 598 646 IPR013978 -
Cpe05g00818 647 SMART HOX_1 22 88 IPR001356 GO:0003677
Cpe05g00818 647 Gene3D - 200 378 IPR023393 -
Cpe05g00818 647 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 564 598 IPR044830 GO:0003700
Cpe05g00818 647 SUPERFAMILY Bet v1-like 163 375 - -
Cpe05g00818 647 SMART START_1 163 373 IPR002913 GO:0008289
Cpe05g00818 647 CDD bZIP 77 116 - -
Cpe05g00818 647 Pfam Homeodomain 26 83 IPR001356 GO:0003677
Cpe05g00818 647 Pfam START domain 164 372 IPR002913 GO:0008289
Cpe05g00818 647 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Cpe05g00818 647 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 598 647 - -
Cpe05g00818 647 CDD homeodomain 25 85 IPR001356 GO:0003677
Cpe05g00818 647 Coils Coil 80 121 - -
Cpe05g00818 647 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 598 647 IPR044830 GO:0003700
Cpe05g00818 647 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Cpe05g00818 647 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 555 IPR044830 GO:0003700
Cpe05g00818 647 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 564 598 - -
Cpe05g00818 647 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 555 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00818 Cpe-Chr5:5072409 Cpe19g01171 Cpe-Chr19:7886271 0 dispersed
Cpe07g00669 Cpe-Chr7:5380729 Cpe05g00818 Cpe-Chr5:5072409 1.64E-20 transposed
Cpe16g00533 Cpe-Chr16:6249568 Cpe05g00818 Cpe-Chr5:5072409 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49536 PF01852 START 8.80E-47 CL0209 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00818 K09338 - csv:101215773 1061.21