Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00821 ATGGGCAAGGACGTTGAGGCAGCCGAGCAAGGCCAATTCCAAGCCAAGGACTACCAAGACCCACCTCCCGCTCCTTTCATCGACCCAGACGAGCTCACCAAATGGTCACTTTACAGAGCCGCCATCGCCGAGTTCATCGCCACTCTCCTCTTCCTCTACGTCACCGTTTTGACTGTTATCGGCTACTCCCACCAAAGTGACCCTAATATCTCCAAAGACCCATGTAACGGCGTCGGAATCCTCGGCATCGCCTGGGCCTTTGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGGATCTCCGGTGGCCACATAAACCCAGCAGTGACCTTTGGGCTGTTCTTGGCAAGGAAGGTGTCGTTGGTTAGGGCCGTGTTGTACATGGTAGCTCAGTGTGCGGGTGCTATCTGTGGCTGTGGGTTGGTTAAGGCTTTCCAGTCGGCGTACTACGTGAGGTATAATGGCGGCGCCAACATGCTCAGTGATGGGTACAACAAAGGCACTGGCTTGGGAGCTGAAATCATCGGTACCTTTGTTCTTGTCTACACCGTCTTCTCCGCCACCGATCCCAAAAGAAGCGCCAGAGATTCCCATGTTCCGGTTTTGGCGCCACTCCCAATTGGATTTGCAGTGTTCATGGTTCACTTAGCCACAATCCCCATCACCGGAACTGGAATTAACCCTGCAAGAAGCTTCGGAGCTGCTGTCATCTTCAACCATGAAAAAGCCTGGGATGATCAATGGATTTTCTGGGTTGGTCCATTCATTGGAGCTGCAATTGCTGCAATTTACCACCAGTATGTACTCAGAGCTGGCGCCATTAAAGCTCTTGGATCCTTCAGGAGCAACGCTTAA 858 52.91 MGKDVEAAEQGQFQAKDYQDPPPAPFIDPDELTKWSLYRAAIAEFIATLLFLYVTVLTVIGYSHQSDPNISKDPCNGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCAGAICGCGLVKAFQSAYYVRYNGGANMLSDGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNHEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAGAIKALGSFRSNA 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5093243 5094932 + Cp4.1LG05g08140.1 Cpe05g00821 470026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00821 285 TIGRFAM MIP: MIP family channel proteins 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe05g00821 285 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe05g00821 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Cpe05g00821 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe05g00821 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe05g00821 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe05g00821 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe05g00821 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe05g00821 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe05g00821 285 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Cpe05g00821 285 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe05g00821 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cpe05g00821 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 285 IPR034294 -
Cpe05g00821 285 PANTHER AQUAPORIN PIP2-4-RELATED 1 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02241 Cpe-Chr1:19049402 Cpe05g00821 Cpe-Chr5:5093243 1.80E-168 dispersed
Cpe05g00821 Cpe-Chr5:5093243 Cpe10g00216 Cpe-Chr10:1223766 2.83E-151 dispersed
Cpe13g00804 Cpe-Chr13:7202436 Cpe05g00821 Cpe-Chr5:5093243 5.48E-20 dispersed
Cpe16g00536 Cpe-Chr16:6270595 Cpe05g00821 Cpe-Chr5:5093243 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00821 K09872 - csv:101215300 535.798