Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe05g00828 | ATGACCGTAATCGACGTCATCTTCCGAGTCGATTCCATTTGCAAGAAATACGAGAAGTATGATGTCGAGAAACAGCGCGAGCTCAATGCTTATGGTGATGATGTTTTTGCTCGCCTCTACGCCGCCGTCGAACTCGAAATCGAAGCCGCTCTCCAGAAATATGAGAGTGCCTGTACGGAGAAGAATAGGGCTGCTGCAGTTGCGATGAACGCTGAGGTTCGGCGGAAGAAGGCCCGATTGATGGATGAAGTTCCCAAGCTTCATAAATTGGCTCGCAAGAAGATTAAAGGGGTTCCGAAAGAAGAGCTTGAGGTCAGAGGTGATCTTGTTCTTGCGCTTGAAGAGAGGATTAAAGCGATTCCAGATGGGAGTACGACAGGCAAACCATCTGGAGGATGGGCCTCCACCTCATCTAACAATATTAAGTTTGATTCAACAACAGATGGACACTTCGAGAGCGAGTATTTCCAACAAAGCGAAGAATCGAGTCAATTTCGACAGGAGTATGATATGCGGAAGATGAAACAGGCATGTCTGGATGTCATATCTGAAGGGTTGGATATGCTGAAAAATCTAGCCCATGATATGAATGAGGAATTGGATAGGCAAGTTCCATTAATTGACGAGATTGACTCAAAGGTAGACAAGGTGACTAATGAGATGAAAAACACCAATGTTAGGCTCAAGCAAACACTGAATGAGGTGAGATCCAGCCAAAACTTCTGCATCGATATCATTCTTCTCTGTATAATTCTTGGAATCGCTTCTTACTTGTACAATATATTGAGCGGAAATGGTTGA | 801 | 44.32 | MTVIDVIFRVDSICKKYEKYDVEKQRELNAYGDDVFARLYAAVELEIEAALQKYESACTEKNRAAAVAMNAEVRRKKARLMDEVPKLHKLARKKIKGVPKEELEVRGDLVLALEERIKAIPDGSTTGKPSGGWASTSSNNIKFDSTTDGHFESEYFQQSEESSQFRQEYDMRKMKQACLDVISEGLDMLKNLAHDMNEELDRQVPLIDEIDSKVDKVTNEMKNTNVRLKQTLNEVRSSQNFCIDIILLCIILGIASYLYNILSGNG | 266 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 5125039 | 5126961 | - | Cp4.1LG05g08260.1 | Cpe05g00828 | 470033 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe05g00828 | 266 | CDD | SNARE_Qc | 179 | 230 | - | - | |
| Cpe05g00828 | 266 | Pfam | SNARE domain | 206 | 255 | IPR000727 | - | |
| Cpe05g00828 | 266 | SUPERFAMILY | SNARE fusion complex | 177 | 229 | - | - | |
| Cpe05g00828 | 266 | Gene3D | - | 171 | 230 | - | - | |
| Cpe05g00828 | 266 | Coils | Coil | 207 | 234 | - | - | |
| Cpe05g00828 | 266 | PANTHER | SYNTAXIN | 1 | 260 | IPR045242 | - | |
| Cpe05g00828 | 266 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 169 | 231 | IPR000727 | - | |
| Cpe05g00828 | 266 | PANTHER | SYNTAXIN-73 | 1 | 260 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g00841 | Cpe-Chr2:5402543 | Cpe05g00828 | Cpe-Chr5:5125039 | 9.23E-119 | dispersed | |
| Cpe16g00543 | Cpe-Chr16:6290195 | Cpe05g00828 | Cpe-Chr5:5125039 | 1.54E-77 | wgd | |
| Cpe03g00174 | Cpe-Chr3:858407 | Cpe05g00828 | Cpe-Chr5:5125039 | 1.69E-119 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe05g00828 | K08506 | - | csv:101211289 | 416.387 |