Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00832 ATGGAAATTGATTTGAACCTAACAGCCAGTGATGTGGGCAAGAATGCATATTGCAATGGAAATTGTGAAGAGGGTCGCTGCAATTATTGTTTATCCTCTTCAACTTCTTCATGTTCCTCAAATTCATCGCCAGCTCTCGTCTCTTCTTCAACTTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCATTGCCTAAGAAAGGAAATGTAGTTGTCTATTTCCCACAAGGTCACTTGGAGCAGATTGCCTCAGCCTCTCCCTTTTCCCCCATGGAAATGCGCACTTTTGACCTCCAGCCGCAGATCCTCTGCAGGGTCATCAATGTCCACTTACTTGCCAATAAGGAGAATGATGAGGTCTACACACAACTTACTCTGCTTCCCTTGCCAGAGTTCTTAGGCACTGGTCTAGAGGGCAAAGAGTTGGAGGAATTGGCGTTGAATGGAGCTGATGGAGATGGGAGCGGAGTGTCGCCTACTAGATCTACACCTCACATGTTTTGCAAAACACTCACAGCGTCTGATACGAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCCGAAGACTGTTTCCCTCCTCTGGATTACACTCAGCTTAGGCCGTCTCAAGAGCTAATTGCCAAGGACCTACATGGCGTCGAGTGGAGATTTAAACATATTTACAGAGGTCAACCTAGGCGGCATCTGCTGACTACTGGATGGAGTCTTTTTGTAAGCCAAAAGAATCTTATTTCTGGGGATGCAGTGCTGTTTTTAAGGGGTGAAAATGGAGAGCTAAGGTTGGGCATAAGGCGAGCTGTTCGGCCTAGAAATGGTCTTCCTGATTCAATTGTGGGCAACCAAAATTCTTGTGCAGATGATCTTGCTCGTGTGGTGAAAGCAATATCTACCAAGAGCATATTTGATGTGTTTTACAATCCAAGGGCATATCATGCACAGTTTGTTATATCTTGTCAGAAGTATGTGAAGAGCATCAATAATCCAGTGACCGTTGGCACAAGATTCAAAATGAGATTTGAGATGGATGATTCGCCAGAAAGAAGGTTTAATGGTGTAGTTCTCGGAATTGGTGACATGGATCCCTTGAGATGGCCGAACTCAAAGTGGAGATGCTTGACGGTACGATGGGATAAAGACGGTGATCATCAAGAACGTGTTTCACCCTGGGAGATCGAACCTTCTGTTTCTCTCCCACCCTTGAGTGTTCAGTCTTCTCCAAGGCTGAAGAAACTGAGGACTAGTCTGCAGGCAGCCCCACCTAACGCCTTTGCTGTAGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAATTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTATTGTATCACCGTTTTATGGACGTGATACTACAAAACGTTCCCTGGAGTTCGAGGTGCGATCTTCTGCACATCAAGCGTCGGGTGGAGCTGAGAAGTATAGAGGTGACTACGTAAAGGTTCATCCGAACTCATCTTTCACAGGCTTTATGGAATCTGAAAGATTCCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACAAACAAGAAAACCAGAACATTGTTTAGGTGTTTGGGGAAAGTTCAATCTCAGTGACAACTCTTTTAACACATTTCACTCACCAAACTCTAGTTTTTATCACATGGCGTCAAATGGAGCCCAAAACATGTATTTCCCTCGTAGTGAATTTTACAGTACAGGCCAAGCTGCTGCTGTGATGCGCTCAAATGATGGCAACTTTCCAAGAGAGAGTGCCTTGTTCAGCCCATCTGTTGATGCTAGTGTTATGAGCACTACTTCAGGGTCGAATATAAAGAATTCAAAGGATGAAAATGTGAATGAGAATTCAACTGGCTGTAGACTTTTTGGCTTTTCCTTGACTACAGAAACTGCTACAAACATGCAGAGTTCAGGGAAGAGGAGTTGTACTAAGGTTCACAAACAAGGTAGTCTAGTGGGAAGAGCCATTGATCTCTCTAGACTCAGTGGCTATACTGATCTGCTTTCTGAACTGGAGCGGCTGTTTTGCATGGAAGGACTCTTGAAAGATCCTGATAAAGGATGGCGTGTACTGTACACCGACAACGAGAACGACGTAATGGTTGTTGGGGATTATCCATGGCTTGACTTCTGTGATGCCGTTTCAAAAATCCATATATACACCCAAGAAGAAGTGGAGAAGATGACAAATGGAGTGATCAGCGATGATACTCAAAGCTGCTTAGACCAAGCTCCTTTGTGTATGGAAGCCTCAAAATCCTCTTCAGTGGGCCAACCTGATTCTTCTCCCACAGTAGGGGCTGCTCATGAGTATAGACTTTGA 2352 44.98 MEIDLNLTASDVGKNAYCNGNCEEGRCNYCLSSSTSSCSSNSSPALVSSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASASPFSPMEMRTFDLQPQILCRVINVHLLANKENDEVYTQLTLLPLPEFLGTGLEGKELEELALNGADGDGSGVSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSLFVSQKNLISGDAVLFLRGENGELRLGIRRAVRPRNGLPDSIVGNQNSCADDLARVVKAISTKSIFDVFYNPRAYHAQFVISCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFNGVVLGIGDMDPLRWPNSKWRCLTVRWDKDGDHQERVSPWEIEPSVSLPPLSVQSSPRLKKLRTSLQAAPPNAFAVGRGGFMDFEDSIRSSKVLQGQENVGIVSPFYGRDTTKRSLEFEVRSSAHQASGGAEKYRGDYVKVHPNSSFTGFMESERFLKVLQGQEICSLRPQTRKPEHCLGVWGKFNLSDNSFNTFHSPNSSFYHMASNGAQNMYFPRSEFYSTGQAAAVMRSNDGNFPRESALFSPSVDASVMSTTSGSNIKNSKDENVNENSTGCRLFGFSLTTETATNMQSSGKRSCTKVHKQGSLVGRAIDLSRLSGYTDLLSELERLFCMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWLDFCDAVSKIHIYTQEEVEKMTNGVISDDTQSCLDQAPLCMEASKSSSVGQPDSSPTVGAAHEYRL 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5149587 5156722 + Cp4.1LG05g08310.1 Cpe05g00832 470037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00832 783 Pfam B3 DNA binding domain 169 270 IPR003340 GO:0003677
Cpe05g00832 783 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 603 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe05g00832 783 SUPERFAMILY DNA-binding pseudobarrel domain 162 280 IPR015300 -
Cpe05g00832 783 Gene3D - 333 402 - -
Cpe05g00832 783 CDD B3_DNA 167 269 IPR003340 GO:0003677
Cpe05g00832 783 SMART B3_2 169 271 IPR003340 GO:0003677
Cpe05g00832 783 Gene3D - 167 271 IPR015300 -
Cpe05g00832 783 Gene3D - 646 739 - -
Cpe05g00832 783 Pfam AUX/IAA family 628 735 IPR033389 -
Cpe05g00832 783 ProSiteProfiles B3 DNA-binding domain profile. 169 271 IPR003340 GO:0003677
Cpe05g00832 783 MobiDBLite consensus disorder prediction 761 783 - -
Cpe05g00832 783 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 607 766 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe05g00832 783 PANTHER AUXIN RESPONSE FACTOR 30 603 - -
Cpe05g00832 783 PANTHER AUXIN RESPONSE FACTOR 607 766 - -
Cpe05g00832 783 Pfam Auxin response factor 296 376 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe05g00832 783 SUPERFAMILY CAD & PB1 domains 652 729 - -
Cpe05g00832 783 ProSiteProfiles PB1 domain profile. 650 734 IPR000270 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00832 Cpe-Chr5:5149587 Cpe19g01041 Cpe-Chr19:7200777 5.47E-155 dispersed
Cpe16g00547 Cpe-Chr16:6316397 Cpe05g00832 Cpe-Chr5:5149587 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49538 PF02309 AUX_IAA 1.10E-06 CL0072 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00832 - - cmo:103501935 1368.21