Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00834 ATGTCATCATCTTATCGAGTTCTTCCTAAGCCATTTGAAGAAAAGTATCCCAAATTGCCTGTTTCTTGTCAGGGTTCTTCACATAGTGAAGCCATGAGACATCCAATTCCCAGACAGGCCCCTCCATTAGTTTCTGGCACTGTTGGGCATTTGTTTTCATCATCTTCTGGATTACGAAACGGTTTTCCGTTGATTCAACCTTTGTCTCAAGAGAGAAATGCCGAGTTTTCTCCGTTCATTTCGTCGTCTGCTAATGATGAACCGTTGTTGGCTCCTCGAGATTCTTCCCATTCAGAAGTGGTGACTAATGACTTGAATGAGAATAATGCATCTTGGAGTGATGATACCCTTCAGGGTTTGCTTGATTTTTCTGAGAATGTTCCTGACCAGAATGGTCAAGCGCAAAGCATTGCTGGTGTGTTAATGGCAGATGAACAAGATAAGAGGAATGATTGGCCTGATTGGGCTGATCAGTTTATTTCTGTGGATGATGCTTTGGAGCCAAATTGGAATGAGATTTTTTCTGATGGTAATGGAGGAGATCCTAAACCAGAGTTGCTCAAATCATCATCAGCTGGTTTCCATGCTCCACAGAACCAAACAAATCAAGTTGACTCTGTACCTACAGCAGAGTTTCACTCGGTTTCTTCTAATTCACTCTCAACATCAACTAACCGACCTCGGATGCGATGGACACCAGAGCTTCACGAGGCATTTGTAGAAGCTGTCAATAAACTAGGTGGCAGCGAAAATGCAACTCCTAAGGGTGTCTTAAAGCTTATGAATGTTGAAGGCCTCACCATTTATCATGTCAAAAGCCACCTACAGAAATATAGAACCGCCAGATATAGACCGGAGTCATCAGAAGGATCTTCAGGGAAAAAAATAAATCATATTGAGGAAATGAAGTCTCTTGACTTGAAAACGAGTATGGGAATAACTGAAGCTTTGCGTTTGCAAATGGAGGTTCAGAAGCGGCTCCATGAACAACTCGAGATCCAAAGGAATTTACAATTACGAATTGAAGAACAAGGTAAGTACCTACAGGAGATGTTTGAGCAACAACGAAAGATGGAAAGCAAGCTAAAGACCTCATCGTCGATCCTCGAGAATATGCCTCGTCCTAATGATCAACCCGAAAATTCAGAACAAGGTCATGTTGCAGCTGGTATGACCACGGAGAACGCTGAGGGCGCTCGAGAAGATGGTTTGCCCGCTGCAAGTAGGAAGCAGAAGGCACATGAAAGAGAAGCGATTGAATCGAGTGAAGGTAACTCTTCTTCCCCGGACACAAAACGAGCTAAATCAGATGCAACAGCTTCATAG 1326 43.21 MSSSYRVLPKPFEEKYPKLPVSCQGSSHSEAMRHPIPRQAPPLVSGTVGHLFSSSSGLRNGFPLIQPLSQERNAEFSPFISSSANDEPLLAPRDSSHSEVVTNDLNENNASWSDDTLQGLLDFSENVPDQNGQAQSIAGVLMADEQDKRNDWPDWADQFISVDDALEPNWNEIFSDGNGGDPKPELLKSSSAGFHAPQNQTNQVDSVPTAEFHSVSSNSLSTSTNRPRMRWTPELHEAFVEAVNKLGGSENATPKGVLKLMNVEGLTIYHVKSHLQKYRTARYRPESSEGSSGKKINHIEEMKSLDLKTSMGITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQEMFEQQRKMESKLKTSSSILENMPRPNDQPENSEQGHVAAGMTTENAEGAREDGLPAASRKQKAHEREAIESSEGNSSSPDTKRAKSDATAS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5326885 5332070 - Cp4.1LG05g08380.1 Cpe05g00834 470039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00834 441 MobiDBLite consensus disorder prediction 361 389 - -
Cpe05g00834 441 Pfam Myb-like DNA-binding domain 228 279 IPR001005 -
Cpe05g00834 441 MobiDBLite consensus disorder prediction 358 441 - -
Cpe05g00834 441 MobiDBLite consensus disorder prediction 192 227 - -
Cpe05g00834 441 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 437 IPR044848 GO:0003700
Cpe05g00834 441 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 2 437 - -
Cpe05g00834 441 Pfam MYB-CC type transfactor, LHEQLE motif 311 358 IPR025756 -
Cpe05g00834 441 MobiDBLite consensus disorder prediction 422 441 - -
Cpe05g00834 441 Coils Coil 314 334 - -
Cpe05g00834 441 MobiDBLite consensus disorder prediction 403 421 - -
Cpe05g00834 441 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 227 280 IPR006447 GO:0003677
Cpe05g00834 441 SUPERFAMILY Homeodomain-like 224 280 IPR009057 -
Cpe05g00834 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 223 283 IPR017930 -
Cpe05g00834 441 Gene3D - 225 284 - -
Cpe05g00834 441 MobiDBLite consensus disorder prediction 172 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00834 - - - csv:101216567 723.391
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00081 Cpe-Chr5:396902 Cpe05g00834 Cpe-Chr5:5326885 1.93E-104 dispersed
Cpe05g00834 Cpe-Chr5:5326885 Cpe19g00131 Cpe-Chr19:1025411 2.55E-43 dispersed
Cpe10g01252 Cpe-Chr10:9686801 Cpe05g00834 Cpe-Chr5:5326885 3.60E-54 transposed
Cpe04g00009 Cpe-Chr4:69613 Cpe05g00834 Cpe-Chr5:5326885 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe15g00191 . 154 356 G2-like Transcription Factor Family AT5G16560 52.2 2.6e-42 170.2
Cpe05g00160 . 168 353 G2-like Transcription Factor Family AT5G16560 53.8 2.9e-41 166.8
Cpe07g00452 CCT,CST 13 152 G2-like Transcription Factor Family AT5G42630 58.3 3.1e-37 152.5
Cpe13g00409 CCT 20 255 G2-like Transcription Factor Family AT1G25550 50.6 3.6e-51 199.1
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT1G25550 52.2 2.5e-44 176.4
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT3G25790 51.8 1.0e-36 151.0
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT5G05090 54.4 2.2e-74 276.2
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT5G05090 53.9 2.3e-71 266.2
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 9.6e-70 260.8
Cpe03g00415 . 1 265 G2-like Transcription Factor Family AT5G05090 57.9 4.5e-67 251.9
Cpe03g01593 CST 12 313 G2-like Transcription Factor Family AT4G13640 56.5 9.0e-61 231.1
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe11g00707 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 4.7e-37 152.5
Cpe05g01028 CST 1 160 G2-like Transcription Factor Family AT1G79430 75.3 3.9e-58 222.6
Cpe08g00397 CST 26 196 G2-like Transcription Factor Family AT1G79430 56.5 1.5e-38 157.5
Cpe03g01593 CST 41 205 G2-like Transcription Factor Family AT1G79430 59.4 6.5e-37 152.1
Cpe10g00724 . 84 317 G2-like Transcription Factor Family AT2G01060 51.6 6.2e-52 201.4
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT3G10760 60.7 4.4e-88 322.0
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT3G10760 61.9 4.4e-88 322.0
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT3G10760 59.5 6.0e-85 311.6
Cpe03g00415 . 1 278 G2-like Transcription Factor Family AT3G10760 56.7 8.6e-76 281.2
Cpe08g01347 . 1 287 G2-like Transcription Factor Family AT2G40970 50.5 3.4e-61 232.3
Cpe19g00248 . 1 204 G2-like Transcription Factor Family AT2G40970 61.6 5.5e-59 224.9
Cpe03g00415 . 1 195 G2-like Transcription Factor Family AT2G40970 59.4 9.3e-59 224.2
Cpe10g01100 . 1 203 G2-like Transcription Factor Family AT2G40970 58.8 1.2e-58 223.8
Cpe05g00834 . 108 367 G2-like Transcription Factor Family AT4G28610 50.2 6.2e-52 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005858 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 0 1 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49539 PF00249 Myb_DNA-binding 1.50E-09 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00834 Cpe_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0