Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00834 ATGTCATCATCTTATCGAGTTCTTCCTAAGCCATTTGAAGAAAAGTATCCCAAATTGCCTGTTTCTTGTCAGGGTTCTTCACATAGTGAAGCCATGAGACATCCAATTCCCAGACAGGCCCCTCCATTAGTTTCTGGCACTGTTGGGCATTTGTTTTCATCATCTTCTGGATTACGAAACGGTTTTCCGTTGATTCAACCTTTGTCTCAAGAGAGAAATGCCGAGTTTTCTCCGTTCATTTCGTCGTCTGCTAATGATGAACCGTTGTTGGCTCCTCGAGATTCTTCCCATTCAGAAGTGGTGACTAATGACTTGAATGAGAATAATGCATCTTGGAGTGATGATACCCTTCAGGGTTTGCTTGATTTTTCTGAGAATGTTCCTGACCAGAATGGTCAAGCGCAAAGCATTGCTGGTGTGTTAATGGCAGATGAACAAGATAAGAGGAATGATTGGCCTGATTGGGCTGATCAGTTTATTTCTGTGGATGATGCTTTGGAGCCAAATTGGAATGAGATTTTTTCTGATGGTAATGGAGGAGATCCTAAACCAGAGTTGCTCAAATCATCATCAGCTGGTTTCCATGCTCCACAGAACCAAACAAATCAAGTTGACTCTGTACCTACAGCAGAGTTTCACTCGGTTTCTTCTAATTCACTCTCAACATCAACTAACCGACCTCGGATGCGATGGACACCAGAGCTTCACGAGGCATTTGTAGAAGCTGTCAATAAACTAGGTGGCAGCGAAAATGCAACTCCTAAGGGTGTCTTAAAGCTTATGAATGTTGAAGGCCTCACCATTTATCATGTCAAAAGCCACCTACAGAAATATAGAACCGCCAGATATAGACCGGAGTCATCAGAAGGATCTTCAGGGAAAAAAATAAATCATATTGAGGAAATGAAGTCTCTTGACTTGAAAACGAGTATGGGAATAACTGAAGCTTTGCGTTTGCAAATGGAGGTTCAGAAGCGGCTCCATGAACAACTCGAGATCCAAAGGAATTTACAATTACGAATTGAAGAACAAGGTAAGTACCTACAGGAGATGTTTGAGCAACAACGAAAGATGGAAAGCAAGCTAAAGACCTCATCGTCGATCCTCGAGAATATGCCTCGTCCTAATGATCAACCCGAAAATTCAGAACAAGGTCATGTTGCAGCTGGTATGACCACGGAGAACGCTGAGGGCGCTCGAGAAGATGGTTTGCCCGCTGCAAGTAGGAAGCAGAAGGCACATGAAAGAGAAGCGATTGAATCGAGTGAAGGTAACTCTTCTTCCCCGGACACAAAACGAGCTAAATCAGATGCAACAGCTTCATAG 1326 43.21 MSSSYRVLPKPFEEKYPKLPVSCQGSSHSEAMRHPIPRQAPPLVSGTVGHLFSSSSGLRNGFPLIQPLSQERNAEFSPFISSSANDEPLLAPRDSSHSEVVTNDLNENNASWSDDTLQGLLDFSENVPDQNGQAQSIAGVLMADEQDKRNDWPDWADQFISVDDALEPNWNEIFSDGNGGDPKPELLKSSSAGFHAPQNQTNQVDSVPTAEFHSVSSNSLSTSTNRPRMRWTPELHEAFVEAVNKLGGSENATPKGVLKLMNVEGLTIYHVKSHLQKYRTARYRPESSEGSSGKKINHIEEMKSLDLKTSMGITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQEMFEQQRKMESKLKTSSSILENMPRPNDQPENSEQGHVAAGMTTENAEGAREDGLPAASRKQKAHEREAIESSEGNSSSPDTKRAKSDATAS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5326885 5332070 - Cp4.1LG05g08380.1 Cpe05g00834 470039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00834 441 MobiDBLite consensus disorder prediction 361 389 - -
Cpe05g00834 441 Pfam Myb-like DNA-binding domain 228 279 IPR001005 -
Cpe05g00834 441 MobiDBLite consensus disorder prediction 358 441 - -
Cpe05g00834 441 MobiDBLite consensus disorder prediction 192 227 - -
Cpe05g00834 441 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 437 IPR044848 GO:0003700
Cpe05g00834 441 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 2 437 - -
Cpe05g00834 441 Pfam MYB-CC type transfactor, LHEQLE motif 311 358 IPR025756 -
Cpe05g00834 441 MobiDBLite consensus disorder prediction 422 441 - -
Cpe05g00834 441 Coils Coil 314 334 - -
Cpe05g00834 441 MobiDBLite consensus disorder prediction 403 421 - -
Cpe05g00834 441 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 227 280 IPR006447 GO:0003677
Cpe05g00834 441 SUPERFAMILY Homeodomain-like 224 280 IPR009057 -
Cpe05g00834 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 223 283 IPR017930 -
Cpe05g00834 441 Gene3D - 225 284 - -
Cpe05g00834 441 MobiDBLite consensus disorder prediction 172 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00081 Cpe-Chr5:396902 Cpe05g00834 Cpe-Chr5:5326885 1.93E-104 dispersed
Cpe05g00834 Cpe-Chr5:5326885 Cpe19g00131 Cpe-Chr19:1025411 2.55E-43 dispersed
Cpe10g01252 Cpe-Chr10:9686801 Cpe05g00834 Cpe-Chr5:5326885 3.60E-54 transposed
Cpe04g00009 Cpe-Chr4:69613 Cpe05g00834 Cpe-Chr5:5326885 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49539 PF00249 Myb_DNA-binding 1.50E-09 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00834 - - csv:101216567 723.391