Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00838 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGGAAAAACCAGTGGGCTCGAATCTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGTAAGGCTCGCTGGTATGAGTGGCTTGACCCTTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGCCTTGAGCGCTATGAGAAACTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGACCCACGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCAGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGATTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAGCTTGAAGAGGCTAGGAGGCTTGCGTCGCTTCAAAAAAGGAGGGAGCTAAAAGCTGCAGGGATTGATAATCGACATCGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTCGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGGAGAAGATAGACCAGTGGAACAGCCCAAATTTCCAGCAACAATTGAGGAGCTTGAAGGCAAAAGAAGGATTGATGTAGAAACTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTTCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCTGGTGATCTTCTTGCTGGTAGTGAAGAGCTTGCCGAAGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCCCAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAGAGGACGCCGGCTGGGAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCGATGCTCACACCCTCAGCAACTCCTGGTGGTGTTGGTCTTACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGTATGACTCCAAAAGGAACACCTATTAGAGATGAGTTACATATCAATGAAGATATGGATGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGGAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCAGAGGAGATGATTGAAGAGGATATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTCGGAAAAGATCTAAAGTGCTACAGAGGGAGCTTCCTCGGCCTCCTACTGCTTCCTTGGAACTTATTAGAAATTCCTTGATCGCTGATGGAGACAAGAGTTCATTTGTACCACCTACCCCTATTGAGAAGGCTGATGAAATGGTAAGAAAGGAACTTCTTGCTTTGCTAGAGCATGACAATGCGAAGTACCCGATCGATGAAAAGGTCAATAAGGAGAAGAAGAAAGGTTCCAAGCGCTCTGGAAATAGACCTACTGCAGCCATCCCCACAATAGATGATTTTGAAGTAACTGAGATGGAAGAGGCTGATTATTTGATAAATGAAGAGGCCCGGTATTTGTGTGTTGCAATGGGGCATGAAAAGGAATCCTTAGATGAGTTTGTGGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCCAGTGTTGCTGGAAACCATGAGAAACTAGCCGCCTTGCAGGATGAGTTTGAGTATGTTAAAAAGAAAATGGATGACGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCACAAATTGAGGCAACGTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGTGGCTCTTCAAAAGCAAGAGATCTCAGCTGCTTCGCACAGGATTAGTGGTATCTCAGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTATGGTGATCTTTTGGCTGACTTGGAAAAGATCCAGAAAATCATGGATGATCGCAAGGCACTGGCACAAAAGGAGGAAGAAATCGCAGTGGAGAGTCGCGCTCTTCAGTTGGCCGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTAATCAATCCGTTGGAGAAAAAGCTGATAATAGTTCTGAAGCCATGTCTGCATCAGCAGAAGTCAATTGTGAAAACTCTATGCCCGTTACCTCAGCCCCCAATGAATTAACGGGCGAGCAACTGAACTTGTCCGTGAGACATGAACATGGCACATCTAATGCCATGGATATCGACGCAGAGAAAGAAAGTGCAGCGGTGAGCTCAGATATTGGCTTAACTGATGACAAACTACCTTCTGCAATGGAAGAGAATGCATCACTGCCAGACAATGGCTTTGAAGATTCTGATAAAAGTCGAACCATTGATGTTCCTTCTCAAGAACTCTTGGGCCCTCATGCAAATGGCTCTCCAGACTCCATTACCGTGGAAAATAAGATCAGCAATGATTCAGTTGATGGAGCAGCTATTCAAAATGTTGAGTGTAGTACCAATAATGTGGAGGAAGTCGAAGATGTTGAAACTCAGCAGCTTAACACTGAAGCTGAAAACTCAGAGTTTCATTTGACTAATCTTGATTCTTCTGCTGCACCTGCATCTTCTAATGAGGATGGCCCTCGTAACGAAGGGGAAGCAACGGAATAG 3102 44.97 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDNRHRKRKRKGIDYNAEIPFEKRPPPGFFDVSGEDRPVEQPKFPATIEELEGKRRIDVETQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYAGDLLAGSEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELHINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLIADGDKSSFVPPTPIEKADEMVRKELLALLEHDNAKYPIDEKVNKEKKKGSKRSGNRPTAAIPTIDDFEVTEMEEADYLINEEARYLCVAMGHEKESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFVALQKQEISAASHRISGISEEVQKQKELERTLQLRYGDLLADLEKIQKIMDDRKALAQKEEEIAVESRALQLAEAEAEAEAEAEANQSVGEKADNSSEAMSASAEVNCENSMPVTSAPNELTGEQLNLSVRHEHGTSNAMDIDAEKESAAVSSDIGLTDDKLPSAMEENASLPDNGFEDSDKSRTIDVPSQELLGPHANGSPDSITVENKISNDSVDGAAIQNVECSTNNVEEVEDVETQQLNTEAENSEFHLTNLDSSAAPASSNEDGPRNEGEATE 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5366479 5376843 + Cp4.1LG05g08350.1 Cpe05g00838 470043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00838 1033 Coils Coil 811 847 - -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 157 176 - -
Cpe05g00838 1033 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 830 860 - -
Cpe05g00838 1033 Coils Coil 167 187 - -
Cpe05g00838 1033 SMART sant 6 55 IPR001005 -
Cpe05g00838 1033 SMART sant 58 105 IPR001005 -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 113 150 - -
Cpe05g00838 1033 PANTHER - 1 908 - -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 992 1033 - -
Cpe05g00838 1033 Pfam pre-mRNA splicing factor component 407 657 IPR021786 -
Cpe05g00838 1033 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cpe05g00838 1033 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 400 414 - -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 945 964 - -
Cpe05g00838 1033 CDD SANT 10 53 IPR001005 -
Cpe05g00838 1033 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cpe05g00838 1033 CDD SANT_CDC5_II 55 106 - -
Cpe05g00838 1033 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cpe05g00838 1033 Gene3D - 60 114 - -
Cpe05g00838 1033 Gene3D - 5 59 - -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 844 860 - -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 382 421 - -
Cpe05g00838 1033 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 908 - -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 992 1021 - -
Cpe05g00838 1033 Pfam Myb-like DNA-binding domain 10 70 - -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 599 618 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00013 Cpe05g00838 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00838 Cpe-Chr5:5366479 Cpe07g00226 Cpe-Chr7:1461089 1.21E-11 dispersed
Cpe04g00013 Cpe-Chr4:139450 Cpe05g00838 Cpe-Chr5:5366479 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49540 PF11831 Myb_Cef 8.30E-58 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00838 K12860 - csv:101206265 1681.77