Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00838 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGGAAAAACCAGTGGGCTCGAATCTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGTAAGGCTCGCTGGTATGAGTGGCTTGACCCTTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGCCTTGAGCGCTATGAGAAACTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGACCCACGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCAGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGATTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAGCTTGAAGAGGCTAGGAGGCTTGCGTCGCTTCAAAAAAGGAGGGAGCTAAAAGCTGCAGGGATTGATAATCGACATCGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTCGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGGAGAAGATAGACCAGTGGAACAGCCCAAATTTCCAGCAACAATTGAGGAGCTTGAAGGCAAAAGAAGGATTGATGTAGAAACTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTTCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCTGGTGATCTTCTTGCTGGTAGTGAAGAGCTTGCCGAAGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCCCAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAGAGGACGCCGGCTGGGAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCGATGCTCACACCCTCAGCAACTCCTGGTGGTGTTGGTCTTACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGTATGACTCCAAAAGGAACACCTATTAGAGATGAGTTACATATCAATGAAGATATGGATGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGGAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCAGAGGAGATGATTGAAGAGGATATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTCGGAAAAGATCTAAAGTGCTACAGAGGGAGCTTCCTCGGCCTCCTACTGCTTCCTTGGAACTTATTAGAAATTCCTTGATCGCTGATGGAGACAAGAGTTCATTTGTACCACCTACCCCTATTGAGAAGGCTGATGAAATGGTAAGAAAGGAACTTCTTGCTTTGCTAGAGCATGACAATGCGAAGTACCCGATCGATGAAAAGGTCAATAAGGAGAAGAAGAAAGGTTCCAAGCGCTCTGGAAATAGACCTACTGCAGCCATCCCCACAATAGATGATTTTGAAGTAACTGAGATGGAAGAGGCTGATTATTTGATAAATGAAGAGGCCCGGTATTTGTGTGTTGCAATGGGGCATGAAAAGGAATCCTTAGATGAGTTTGTGGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCCAGTGTTGCTGGAAACCATGAGAAACTAGCCGCCTTGCAGGATGAGTTTGAGTATGTTAAAAAGAAAATGGATGACGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCACAAATTGAGGCAACGTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGTGGCTCTTCAAAAGCAAGAGATCTCAGCTGCTTCGCACAGGATTAGTGGTATCTCAGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTATGGTGATCTTTTGGCTGACTTGGAAAAGATCCAGAAAATCATGGATGATCGCAAGGCACTGGCACAAAAGGAGGAAGAAATCGCAGTGGAGAGTCGCGCTCTTCAGTTGGCCGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTAATCAATCCGTTGGAGAAAAAGCTGATAATAGTTCTGAAGCCATGTCTGCATCAGCAGAAGTCAATTGTGAAAACTCTATGCCCGTTACCTCAGCCCCCAATGAATTAACGGGCGAGCAACTGAACTTGTCCGTGAGACATGAACATGGCACATCTAATGCCATGGATATCGACGCAGAGAAAGAAAGTGCAGCGGTGAGCTCAGATATTGGCTTAACTGATGACAAACTACCTTCTGCAATGGAAGAGAATGCATCACTGCCAGACAATGGCTTTGAAGATTCTGATAAAAGTCGAACCATTGATGTTCCTTCTCAAGAACTCTTGGGCCCTCATGCAAATGGCTCTCCAGACTCCATTACCGTGGAAAATAAGATCAGCAATGATTCAGTTGATGGAGCAGCTATTCAAAATGTTGAGTGTAGTACCAATAATGTGGAGGAAGTCGAAGATGTTGAAACTCAGCAGCTTAACACTGAAGCTGAAAACTCAGAGTTTCATTTGACTAATCTTGATTCTTCTGCTGCACCTGCATCTTCTAATGAGGATGGCCCTCGTAACGAAGGGGAAGCAACGGAATAG 3102 44.97 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDNRHRKRKRKGIDYNAEIPFEKRPPPGFFDVSGEDRPVEQPKFPATIEELEGKRRIDVETQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYAGDLLAGSEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELHINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLIADGDKSSFVPPTPIEKADEMVRKELLALLEHDNAKYPIDEKVNKEKKKGSKRSGNRPTAAIPTIDDFEVTEMEEADYLINEEARYLCVAMGHEKESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFVALQKQEISAASHRISGISEEVQKQKELERTLQLRYGDLLADLEKIQKIMDDRKALAQKEEEIAVESRALQLAEAEAEAEAEAEANQSVGEKADNSSEAMSASAEVNCENSMPVTSAPNELTGEQLNLSVRHEHGTSNAMDIDAEKESAAVSSDIGLTDDKLPSAMEENASLPDNGFEDSDKSRTIDVPSQELLGPHANGSPDSITVENKISNDSVDGAAIQNVECSTNNVEEVEDVETQQLNTEAENSEFHLTNLDSSAAPASSNEDGPRNEGEATE 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5366479 5376843 + Cp4.1LG05g08350.1 Cpe05g00838 470043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00838 1033 Coils Coil 811 847 - -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 157 176 - -
Cpe05g00838 1033 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 830 860 - -
Cpe05g00838 1033 Coils Coil 167 187 - -
Cpe05g00838 1033 SMART sant 6 55 IPR001005 -
Cpe05g00838 1033 SMART sant 58 105 IPR001005 -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 113 150 - -
Cpe05g00838 1033 PANTHER - 1 908 - -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 992 1033 - -
Cpe05g00838 1033 Pfam pre-mRNA splicing factor component 407 657 IPR021786 -
Cpe05g00838 1033 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cpe05g00838 1033 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 400 414 - -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 945 964 - -
Cpe05g00838 1033 CDD SANT 10 53 IPR001005 -
Cpe05g00838 1033 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cpe05g00838 1033 CDD SANT_CDC5_II 55 106 - -
Cpe05g00838 1033 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cpe05g00838 1033 Gene3D - 60 114 - -
Cpe05g00838 1033 Gene3D - 5 59 - -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 844 860 - -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 382 421 - -
Cpe05g00838 1033 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 908 - -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 992 1021 - -
Cpe05g00838 1033 Pfam Myb-like DNA-binding domain 10 70 - -
Cpe05g00838 1033 MobiDBLite consensus disorder prediction 599 618 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00838 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - csv:101206265 1681.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00013 Cpe05g00838 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00838 Cpe-Chr5:5366479 Cpe07g00226 Cpe-Chr7:1461089 1.21E-11 dispersed
Cpe04g00013 Cpe-Chr4:139450 Cpe05g00838 Cpe-Chr5:5366479 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g604 . . Bda07g01179 . . Bpe09g00664 . . . . . . . Car12g00806 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma11g00972 . . Cpe04g00013 Cpe05g00838 . . . . . . . . . . . . . . . Csa01g03419 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g00013 CST 1 847 MYB-Related Transcription Factor Family AT1G09770 76.9 0.0e+00 1218.4
Cpe05g00838 CST 1 825 MYB-Related Transcription Factor Family AT1G09770 77.4 0.0e+00 1198.0
Cpe18g00686 . 165 630 MYB-Related Transcription Factor Family AT3G18100 55.3 2.7e-148 523.1
Cpe18g00686 . 165 630 MYB-Related Transcription Factor Family AT3G18100 55.3 2.7e-148 523.1
Cpe04g00013 CST 1 847 MYB-Related Transcription Factor Family AT1G09770 76.9 0.0e+00 1218.4
Cpe05g00838 CST 1 825 MYB-Related Transcription Factor Family AT1G09770 77.4 0.0e+00 1198.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49540 PF11831 Myb_Cef 8.30E-58 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00838 Cpe_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0