Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00861 ATGATATATCGTTTGATTTGCCTGTATAAAGGATATTGTTCGATAAGCTTATCGTTTGGTTTATCATTATTAACTTTTTCAGTTTACAAATTTAAAATGGGGAAAGAGAAGGTTCACATTAACATTGTGGTCATTGGCCACGTCGATTCCGGGAAGTCCACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATTGAAAGATTCGAGAAGGAGGCTGCCGAGATGAACAAGAGGTCCTTCAAGTATGCCTGGGTCTTGGACAAGCTCAAGGCTGAGCGTGAGCGTGGTATCACCATCGATATTGCCTTGTGGAAGTTTGAGACCACCAAATACTACTGCACCGTTATTGATGCTCCTGGACATCGTGATTTCATTAAGAACATGATTACTGGTACCTCACAGGCCGATTGTGCTGTTCTCATTATTGACTCCACCACTGGTGGTTTTGAAGCGGGTATTTCCAAGGATGGTCAAACCCGTGAGCATGCTTTGCTTGCGTTTACCCTTGGTGTTAAGCAGATGATCTGCTGCTGCAACAAGATGGATGCCACCACTCCCAAGTACTCGAAGGCAAGATATGATGAAATTGTCAAGGAAGTTTCTTCTTACCTCAAGAAGGTGGGCTACAACCCTGATAAAATCCCATTCGTCCCCATCTCTGGTTTTGAAGGAGACAACATGATTGAGAGGTCAACCAACCTCGATTGGTACAAGGGCCCAACCCTCCTTGAGGCTCTTGATTTGATCCAGGAGCCCAAGAGGCCTTCAGACAAGCCACTCCGTCTTCCACTTCAGGACGTTTACAAGATTGGTGGTATTGGAACTGTCCCAGTTGGACGAGTTGAGACCGGTGTACTCAAGCCAGGAATGGTCGTCTGTTTTGGCCCTACTGGATTGACAACTGAAGTTAAGTCTGTTGAGATGCACCATGAAGCTCTCCCAGAGGCCGTTCCAGGTGACAATGTTGGATTCAACGTGAAGAATGTTGCTGTCAAGGATCTTAAGCGTGGTTTCGTTGCCTCCAATTCCAAGGATGACCCTGCCAGGGAGGCTGCCAACTTCACTTCTCAAGTCATCATCATGAACCATCCAGGACAGATTGGCAATGGCTATGCTCCAGTGCTTGATTGCCACACCTCTCACATTGCCGTGAAGTTTTCTGAGATTCTAACCAAGATTGACAGGCGATCTGGTAAGGAACTTGAGAAGGAGCCTAAGTTCTTGAAGAACGGTGATGCTGGTATGATAAAGATGGTTCCCACCAAGCCGATGGTGGTGGAAACATTCTCTTCATACCCTCCTCTTGGACGATTTGCCGTGAGGGACATGAGACAGACGGTTGCTGTCGGTGTCATCAAGTCGGTCGAGAAGAAGGATCCAAGTGGTGCCAAGGTTACCAAATCTGCAGCCAAGAAGGCTGGAAAGTGA 1446 47.03 MIYRLICLYKGYCSISLSFGLSLLTFSVYKFKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVCFGPTGLTTEVKSVEMHHEALPEAVPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLKNGDAGMIKMVPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKAGK 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5660508 5663182 - Cp4.1LG05g08600.1 Cpe05g00861 470066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00861 481 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 358 461 IPR009001 -
Cpe05g00861 481 PRINTS GTP-binding elongation factor signature 136 147 IPR000795 GO:0003924|GO:0005525
Cpe05g00861 481 PRINTS GTP-binding elongation factor signature 180 189 IPR000795 GO:0003924|GO:0005525
Cpe05g00861 481 PRINTS GTP-binding elongation factor signature 41 54 IPR000795 GO:0003924|GO:0005525
Cpe05g00861 481 PRINTS GTP-binding elongation factor signature 120 130 IPR000795 GO:0003924|GO:0005525
Cpe05g00861 481 PRINTS GTP-binding elongation factor signature 100 108 IPR000795 GO:0003924|GO:0005525
Cpe05g00861 481 Pfam Elongation factor Tu GTP binding domain 38 253 IPR000795 GO:0003924|GO:0005525
Cpe05g00861 481 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 37 262 IPR000795 GO:0003924|GO:0005525
Cpe05g00861 481 CDD EF1_alpha_II 262 352 - -
Cpe05g00861 481 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 33 465 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cpe05g00861 481 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 93 108 IPR031157 -
Cpe05g00861 481 Gene3D Translation factors 355 462 - -
Cpe05g00861 481 SUPERFAMILY Translation proteins 263 353 IPR009000 -
Cpe05g00861 481 CDD EF1_alpha_III 355 458 - -
Cpe05g00861 481 Gene3D Translation factors 261 348 - -
Cpe05g00861 481 CDD EF1_alpha 41 259 - -
Cpe05g00861 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 281 IPR027417 -
Cpe05g00861 481 PANTHER ELONGATION FACTOR 1-ALPHA 33 479 - -
Cpe05g00861 481 Pfam Elongation factor Tu C-terminal domain 354 461 IPR004160 -
Cpe05g00861 481 Pfam Elongation factor Tu domain 2 280 345 IPR004161 GO:0005525
Cpe05g00861 481 PANTHER TRANSLATION FACTOR 33 479 - -
Cpe05g00861 481 Gene3D - 27 260 IPR027417 -
Cpe05g00861 481 Hamap Elongation factor Tu [tuf]. 34 464 IPR004539 GO:0003746|GO:0005525|GO:0006414
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00861 Cpe-Chr5:5660508 Cpe17g00257 Cpe-Chr17:1686638 0 dispersed
Cpe13g00816 Cpe-Chr13:7275231 Cpe05g00861 Cpe-Chr5:5660508 0 wgd
Cpe16g00549 Cpe-Chr16:6326649 Cpe05g00861 Cpe-Chr5:5660508 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00861 K03231 - csv:101213221 892.108