Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe05g00866 | ATGGAAGGAAGTGATTCAATCACCACCGTTTCGTCTACTCCACTATCTCAATCTCCTTCTTCTTCTTCTTCTCCCGCTTCACCGCCGCCTCTCGTTCTCAGTCCTTGTGCGGCCTGCAGGATTTTGAGGCGGCGATGTGCCGGAGGATGTGTATTGGCGCCCTATTTCCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCGAGTAATATCATTAAATGCTTGCAGGAACTGCCTGAATCACAAAGGGCCGATGCAGTGAGCAGCATGGTTTATGAAGCAAATGCGAGGATCAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTCCAAAAGCAAGTCAATGATCTTCAAGCGCAGCTAGCGAAGGCTCAGGCTGAGCTTCTCAACATGGAATGCCAACAAGCCAATCTGGTGGCCTTCGTTTGCAGGGAATTAGCTCAGTCTCACCACCAGTGTTTTGATGATTTCAATGCCAGCCCTCACAGCGGCTTCCATAGCATCACCCAAACCAACTTCGATGATTATAGCAATGTAAACCAAATATGGGAACCTCTCTGGACATGA | 588 | 50.17 | MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACRILRRRCAGGCVLAPYFPPTEPAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQVNDLQAQLAKAQAELLNMECQQANLVAFVCRELAQSHHQCFDDFNASPHSGFHSITQTNFDDYSNVNQIWEPLWT | 195 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 5685489 | 5687044 | - | Cp4.1LG05g08710.1 | Cpe05g00866 | 470071 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe05g00866 | 195 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Cpe05g00866 | 195 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 11 | 192 | - | - | |
| Cpe05g00866 | 195 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Cpe05g00866 | 195 | ProSiteProfiles | LOB domain profile. | 34 | 135 | IPR004883 | - | |
| Cpe05g00866 | 195 | Coils | Coil | 114 | 141 | - | - | |
| Cpe05g00866 | 195 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1-LIKE | 11 | 192 | - | - | |
| Cpe05g00866 | 195 | Pfam | Lateral organ boundaries (LOB) domain | 35 | 132 | IPR004883 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g01297 | Cpe-Chr2:11546733 | Cpe05g00866 | Cpe-Chr5:5685489 | 1.06E-32 | dispersed | |
| Cpe05g00866 | Cpe-Chr5:5685489 | Cpe20g00754 | Cpe-Chr20:6701146 | 1.39E-71 | dispersed | |
| Cpe01g01139 | Cpe-Chr1:6773070 | Cpe05g00866 | Cpe-Chr5:5685489 | 1.39E-73 | wgd | |
| Cpe01g00236 | Cpe-Chr1:1342584 | Cpe05g00866 | Cpe-Chr5:5685489 | 3.86E-75 | wgd | |
| Cpe13g00820 | Cpe-Chr13:7303134 | Cpe05g00866 | Cpe-Chr5:5685489 | 6.16E-63 | wgd | |
| Cpe16g00556 | Cpe-Chr16:6368390 | Cpe05g00866 | Cpe-Chr5:5685489 | 1.43E-104 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49542 | PF03195 | LOB | 3.50E-40 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe05g00866 | - | - | csv:101215067 | 259.996 |