Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00875 ATGTTTGATCTTAATCTCAATGTCGACTCGGTTGATGCGACTCAGAAGGAGGACTCCGTCGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCATGTGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGACGACTCGTGCTCCACACGCGCTGGTGGCGAGCTCTTCACGCTCAACTTCGAAATATTGAAGGCTGGAAGCACGAACGATATGGTCACTAAGGAATTTTTTCCATTAGGTGGAGCGGTGAATGCTGAATTCGGGATTCCTCAGGGGCATAAATCGGCCTCTTCTTCGTCATCTTCATCGAGGAAGAACTGGATCGACCTTGCGTGCAATCGAAGCAGTTCAGCAGGGGAGGGGAGAACCGTTCAGCCAGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGAGGTCCAAGGTCTCGGAGTTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCACATATTTGGGACTGCGGGAAGCAAGTCTATCTCGGTGGATTCGACACGGCACACTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTCAGGGGGGTAGACGCTGATATTAATTTCAATGTTAGCGATTATGAGGAAGACCTGAAACTGATGGAGAACTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGCACTGGTTTCTCAAGGGGGAGCTCAAAATATAGAGGGGTAACACTGCACAAATGTGGCCGATGGGAGGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTTGGGCTGTTCGACAGCGAGGTCGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTAACCAACTTTGAGCCTAGCACATACGAAGGAGAGGGAGTTTCTGAGGGCAGCAGTGAAGGTGGTCGGAGTATGCTTGATTTGAATTTAGGGATTTCACCCCCTTCCAACTGTCCAAAGGATGATGATGGGCATCTGCGATTCCAATCTGGTCCTTGCTTTCCTAATGATAGGAGCACAATGATGGAGAGCAATGCCCGTGCAGCAGTTGGCGATCCACCTGTGAATGGATTGGTAATGACATCAGAGCATGCTCCCTTATGGAACGGTACACAATCTAGCTTCTTCCCCAGTGAGGAAAGCATGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGTGTCCCTAACTGGGCATGGCAAATCCATGGCCCGATTAATGCCGCCCAAATGCCACTGTTCTCTACTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATGCCTCCGCCTCACCAACCGAGCTCGATCGCCCAAAATATCCATTTCAATTCTGCCAAAGCTTCCCTCAACTCCCCCCAGTATCACCACCTGTTGAACCAACAACATGCACCGCCATAA 1479 50.3 MFDLNLNVDSVDATQKEDSVVFFEKLPQGSGNHVDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTLNFEILKAGSTNDMVTKEFFPLGGAVNAEFGIPQGHKSASSSSSSSRKNWIDLACNRSSSAGEGRTVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNVSDYEEDLKLMENLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEGVSEGSSEGGRSMLDLNLGISPPSNCPKDDDGHLRFQSGPCFPNDRSTMMESNARAAVGDPPVNGLVMTSEHAPLWNGTQSSFFPSEESMTEKRLALGSSQGVPNWAWQIHGPINAAQMPLFSTAASSGFSFSATHFPAAMPPPHQPSSIAQNIHFNSAKASLNSPQYHHLLNQQHAPP 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5758181 5762169 + Cp4.1LG05g08660.1 Cpe05g00875 470080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00875 492 MobiDBLite consensus disorder prediction 32 58 - -
Cpe05g00875 492 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 460 - -
Cpe05g00875 492 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 460 - -
Cpe05g00875 492 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Cpe05g00875 492 MobiDBLite consensus disorder prediction 128 142 - -
Cpe05g00875 492 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700|GO:0006355
Cpe05g00875 492 Gene3D AP2/ERF domain 156 215 IPR036955 GO:0003700|GO:0006355
Cpe05g00875 492 CDD AP2 157 215 IPR001471 GO:0003700|GO:0006355
Cpe05g00875 492 SUPERFAMILY DNA-binding domain 156 215 IPR016177 GO:0003677
Cpe05g00875 492 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Cpe05g00875 492 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700|GO:0006355
Cpe05g00875 492 CDD AP2 248 308 IPR001471 GO:0003700|GO:0006355
Cpe05g00875 492 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700|GO:0006355
Cpe05g00875 492 SMART rav1_2 249 312 IPR001471 GO:0003700|GO:0006355
Cpe05g00875 492 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
Cpe05g00875 492 MobiDBLite consensus disorder prediction 128 158 - -
Cpe05g00875 492 MobiDBLite consensus disorder prediction 27 59 - -
Cpe05g00875 492 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Cpe05g00875 492 Pfam AP2 domain 248 298 IPR001471 GO:0003700|GO:0006355
Cpe05g00875 492 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00875 Cpe-Chr5:5758181 Cpe05g01156 Cpe-Chr5:7851229 3.10E-104 dispersed
Cpe01g01135 Cpe-Chr1:6736665 Cpe05g00875 Cpe-Chr5:5758181 4.31E-10 wgd
Cpe01g00229 Cpe-Chr1:1301560 Cpe05g00875 Cpe-Chr5:5758181 8.41E-10 wgd
Cpe16g00565 Cpe-Chr16:6443669 Cpe05g00875 Cpe-Chr5:5758181 0 wgd
Cpe19g00398 Cpe-Chr19:3551661 Cpe05g00875 Cpe-Chr5:5758181 9.14E-98 wgd
Cpe03g00153 Cpe-Chr3:770883 Cpe05g00875 Cpe-Chr5:5758181 2.41E-125 wgd
Cpe05g00875 Cpe-Chr5:5758181 Cpe08g01126 Cpe-Chr8:8455417 9.13E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49544 PF00847 AP2 3.10E-09 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00875 K09284 - csv:101222024 818.535