Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00878 ATGGAGCCGTTGGAAAAACCGGTGCCGAAGTCGTCGCCTCTCGCGCCATTTCCTCGGGACTCAAGAGGATCGCTCGAGGTTTTTAATCCCTCCGCCACTTACACGTCGCGATCCATCAATTCCATTTCACGCCCGAACTCTACGTGGTCCAATTGGGTGGAGCCACGTAGCAGTGCGGAGTCTGACTCCACTAGACTCGCCGCCGTTCCGACGAGTAAGACCGGCGAGGATATCACGTCATGGATGGCCTTCAAGGATTCGAATGCTTCACCACAATCCAACTCGCCACAAGCTCAGAAGACTATCTCGGCGATTCTCAGCGACAAATCGCCGCCGAAATCAGCGGGCGAAGTAGACTCTGCCGCCTTACGTGCTGCCGAGTGGGGATTGGTACTGAAAACCGATACGGAAACTGGAAAACCGCAGGGCGTTGGAGTTCGAACTTCCGGCGGCGATGAACCGATTAACAAACTGGAGAATTCGAGAAGAACTTCGAATAACTCGGGGCGGAGTTCGGGCGACATGTCGGACGATGTGGGAAGAGAAAGAGGGTTTCCGAGAGTCTCTGAGGATTTGAAAGACGCTCTCTCGACATTTCAGCAAACATTTGTGGTTTCTGATGCTACGAAACCTGATTATCCGATTATGTACGCCAGTGCTGGATTCTTCAAGATGACTGGCTATACATCCAAGGAAGGTGCAGATACAGACCCAGAAGATGTGGCCAAGATTCGAGAGGCTTTACAAGCTGGGACAAGTTACTGTGGGAGGTTGTTGAATTACAAGAAAGATGGGACCCCGTTTTGGAATTTGCTTACTATTTCACCTATCAAAGATGATGATGGCAAGGTTCTCAAATTTATTGGAATGCAAGTAGAGGTGAGCAAACACACAGAGGGATTCAAAGATAAGATGGTCCGTCCTAATGGCTTGCCAGAATCGTTGATTCGTTATGATGCCCGTCAAAAGGATATGGCTACCAGTTCGGTAGCGGAGCTTGTGCAGGCGGTGAAAATGCCTGGGTCTGTGTCTGTAAGTGAATCTAGGCCACGGGCTCTAAGTGAATCTATGAACCGCCGGTCAGTAAGAAAATCCGGCGGCGGTGGCGGCGGAGATGAGGCATATAGACTTGAAGCTGCTATGGTTAGGCGGAAGTCAGAGAGTGCAGCAGCTTCAACTGGACGACGTAGAAGGTCGATGGAGCGTATCAATGAGCTGCCGGAGACCAAACCCAAAAAGTATAGCCGTCGTTCATTTATGGGGATTGTGAGGAAAAGTCAATCAAATACTGAAAGCTTCAACATTGAAAATTGTTCGGACGATGATAACGAGAGCGATGATGATGAGAGACCAGATAGCGTAGACGACAAAGTAAGACAAAAGGAAATGAGGAAGGGTATTGATTTAGCGACCACCCTCGAACGTATAGAGAAAAACTTCGTCATCACCGATCCGAGACTGCCCGACAATCCCATTATATTTGCTTCTGATAGCTTCCTGGAGCTGACTGAGTTCCTGCAAGGTCCTGAAACCGATCGAGCAACTGTCAAGAAAATAAGAGATGCAATTGACAACCAAGCTGAAGTTACGGTGCAGCTTATTAACTACACCAAAACTGGTAAGAAGTTTTGGAATCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGAGAAGTCCAGTATTTTATTGGAGTACAACTTGACGGGAGTCAGCACGTCGAACCGCTAAGCAATTGCATATCGGAAACTACTGCAAAAGAGGGCGAAAAATTGGTAAAAGAAACTGCTGAAAATATTGATACGGCGGCTAGAGAACTTCCCGATGCCAATTTGAGACCAGAAGATTTATGGGCAAATCATTCTAAAGTGGTCCAACCAAAACCTCACAGAAAGGATAGTGCTTCTTGGAAAGCTTTCCAGAAGATTTTAGACAGTGGAGAACAGATAGGACTGAAACATTTCAAGCCGGTTAAACCTTTGGGATCAGAACTGTGTGGGACTGATCAGTATTTTGCCATGAAGGCAATGGACAAGGGTGTTATGCTTAACCGCAACAAGGTGCATAGAGCTTGCGCCGAGAGGGAAATACTCGACAAGTTGGATCATCCTTTTCTTCCTGCGTTATATGCTTCATTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGCCCTGGTGGAGAACTCTTTCTGCTTTTGGAGAGACAACCTACAAAGTATCTTCATTGTCAAGGGATAATTTACAGAGATCTGAAGCCTGAGAACGTTCTACTCCGGGGAGACGGACACGTGACGTTGACGGATTTTGACTTGTCATGTTTGACTGCTTCCAAACCTCAGCTTTTGTTTCCAACGATGAATGAGAAGAAAAAACAATCAAGATCTCAACAGGCTCCGATCTTTATGGCTGAACCTATGCGAGCATCGAACTCATTCGTCGGCACTGAAGAGTACATAGCACCGGAAATCATCACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGTGTCCTCCTATATGAGATGCTCTATGGATACACACCCTTTAGGGGGAAGACGAGGCAAAAGACTTTTGCCAACGTTCTTCATAAGGACCTTAAATTTCCCAAAAATCCCAAAACTCGATTGGGTTCTCAACAAGGGGCTAATGAAATCAAACGACATCCGTTCTTCCGAGGCATCAATTGGGCGCTCGTTCGTTGCATGAAACCTCCCGAGCTCGAAGCGCCTCTCTTCCCGACCACCGATGCCGAAAAAGAAGCTAATAAGGCATCAGATTTTGATGGAAAAGATGTTGAACTCAGTGTTTTCTGA 2826 47.03 MEPLEKPVPKSSPLAPFPRDSRGSLEVFNPSATYTSRSINSISRPNSTWSNWVEPRSSAESDSTRLAAVPTSKTGEDITSWMAFKDSNASPQSNSPQAQKTISAILSDKSPPKSAGEVDSAALRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPINKLENSRRTSNNSGRSSGDMSDDVGRERGFPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKDMATSSVAELVQAVKMPGSVSVSESRPRALSESMNRRSVRKSGGGGGGDEAYRLEAAMVRRKSESAAASTGRRRRSMERINELPETKPKKYSRRSFMGIVRKSQSNTESFNIENCSDDDNESDDDERPDSVDDKVRQKEMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEFLQGPETDRATVKKIRDAIDNQAEVTVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCISETTAKEGEKLVKETAENIDTAARELPDANLRPEDLWANHSKVVQPKPHRKDSASWKAFQKILDSGEQIGLKHFKPVKPLGSELCGTDQYFAMKAMDKGVMLNRNKVHRACAEREILDKLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLERQPTKYLHCQGIIYRDLKPENVLLRGDGHVTLTDFDLSCLTASKPQLLFPTMNEKKKQSRSQQAPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGVLLYEMLYGYTPFRGKTRQKTFANVLHKDLKFPKNPKTRLGSQQGANEIKRHPFFRGINWALVRCMKPPELEAPLFPTTDAEKEANKASDFDGKDVELSVF 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5791431 5801531 + Cp4.1LG05g08800.1 Cpe05g00878 470083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00878 941 Gene3D Transferase(Phosphotransferase) domain 1 741 912 - -
Cpe05g00878 941 MobiDBLite consensus disorder prediction 160 174 - -
Cpe05g00878 941 SUPERFAMILY PYP-like sensor domain (PAS domain) 481 568 IPR035965 -
Cpe05g00878 941 SMART pac_2 530 572 IPR001610 -
Cpe05g00878 941 SMART pac_2 255 297 IPR001610 -
Cpe05g00878 941 CDD PAS 480 568 IPR000014 -
Cpe05g00878 941 Gene3D PAS domain 453 606 - -
Cpe05g00878 941 SMART serkin_6 654 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g00878 941 MobiDBLite consensus disorder prediction 421 436 - -
Cpe05g00878 941 SUPERFAMILY Protein kinase-like (PK-like) 638 916 IPR011009 -
Cpe05g00878 941 Pfam PAS domain 209 295 IPR000014 -
Cpe05g00878 941 Pfam PAS domain 488 568 IPR000014 -
Cpe05g00878 941 MobiDBLite consensus disorder prediction 26 108 - -
Cpe05g00878 941 MobiDBLite consensus disorder prediction 377 415 - -
Cpe05g00878 941 PANTHER FLIPPASE KINASE 1-RELATED 138 941 - -
Cpe05g00878 941 CDD STKc_phototropin_like 652 914 - -
Cpe05g00878 941 SUPERFAMILY PYP-like sensor domain (PAS domain) 209 295 IPR035965 -
Cpe05g00878 941 ProSiteProfiles PAC domain profile. 527 581 IPR000700 -
Cpe05g00878 941 Gene3D Phosphorylase Kinase; domain 1 619 740 - -
Cpe05g00878 941 ProSiteProfiles Protein kinase domain profile. 643 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g00878 941 PANTHER PHOTOTROPIN-1 138 941 - -
Cpe05g00878 941 ProSiteProfiles PAC domain profile. 252 306 IPR000700 -
Cpe05g00878 941 MobiDBLite consensus disorder prediction 437 451 - -
Cpe05g00878 941 CDD PAS 215 294 IPR000014 -
Cpe05g00878 941 Pfam Protein kinase domain 667 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g00878 941 MobiDBLite consensus disorder prediction 1 119 - -
Cpe05g00878 941 MobiDBLite consensus disorder prediction 133 183 - -
Cpe05g00878 941 ProSitePatterns Serine/Threonine protein kinases active-site signature. 747 759 IPR008271 GO:0004672|GO:0006468
Cpe05g00878 941 Gene3D PAS domain 202 345 - -
Cpe05g00878 941 MobiDBLite consensus disorder prediction 342 461 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00878 Cpe-Chr5:5791431 Cpe16g00373 Cpe-Chr16:5385784 0 dispersed
Cpe16g00570 Cpe-Chr16:6489886 Cpe05g00878 Cpe-Chr5:5791431 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62420 PF00069 Pkinase 3.00E-40 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00878 K20715 - csv:101214662 1558.5