Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00918 ATGCCTATGGCAGAAGGAGAGGATATCCAGCCACTCGTCTGTGACAACGGAACTGGAATGGTTAAGGCTGGCTTTGCTGGAGATGATGCTCCAAGGGCCGTGTTCCCTAGTATAGTAGGTCGACCAAGGCATACCGGTGTGATGGTTGGTATGGGCCAAAAGGATGCGTACGTTGGGGATGAAGCTCAGTCCAAACGAGGTATATTGACTTTGAAATATCCCATAGAGCATGGTATCGTGAGCAATTGGGATGACATGGAAAAAATTTGGCATCATACCTTCTACAATGAACTCCGAGTGGCCCCTGAAGAGCACCCTGTCCTACTCACTGAAGCCCCTCTGAATCCAAAGGCAAATCGTGAAAAAATGACCCAAATCATGTTCGAGACCTTCAACGCTCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCGCTCTATGCTAGTGGACGCACAACTGGTATTGTTATGGATTCTGGTGATGGTGTCAGTCACACTGTCCCAATTTACGAGGGATATGCTCTCCCCCATGCCATTCTTCGTCTCGACCTCGCTGGCCGTGACCTCACTGATGCCCTTATGAAAATCTTGACTGAACGTGGGTACTCCTTCACCACCTCAGCAGAGCGAGAAATTGTGAGAGATGTGAAGGAAAAACTAGCATACATTGCCCTCGATTACGAGCAAGAACTCGAAACTTCCAAAACTGGTTCATCTGTTGAGAAGAGTTATGAACTTCCAGATGGGCAGATTATCACAATCGGTGCAGAACGTTTCCGATGCCCTGAAGTTCTTTTCCAGCCTTCAATGATTGGAATGGAAGCTGCAGGCATCCACGAAACAACCTATAACTCCATCATGAAATGCGATGTTGACATCAGAAAGGATCTGTATGGAAACATTGTTCTTAGTGGAGGAACAACCATGTTCCCAGGCATTGCTGATCGAATGAGCAAAGAAATAACTGCATTAGCCCCAAGCAGCATGAAAATTAAAGTGGTAGCTCCTCCTGAAAGGAAGTACAGTGTCTGGATTGGTGGCTCCATTCTAGCCTCACTCAGCACGTTTCAGCAGATGTGGATTGCAAAGGCTGAGTATGATGAGTCTGGCCCGTCCATTGTGCACAGGAAATGCTTCTGA 1140 47.19 MPMAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETSKTGSSVEKSYELPDGQIITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6032163 6034341 + Cp4.1LG05g09080.1 Cpe05g00918 470123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00918 379 SMART actin_3 9 379 IPR004000 -
Cpe05g00918 379 ProSitePatterns Actins and actin-related proteins signature. 108 120 IPR020902 -
Cpe05g00918 379 SUPERFAMILY Actin-like ATPase domain 8 156 IPR043129 -
Cpe05g00918 379 CDD NBD_sugar-kinase_HSP70_actin 12 185 - -
Cpe05g00918 379 Gene3D - 142 342 - -
Cpe05g00918 379 ProSitePatterns Actins signature 2. 360 368 IPR004001 -
Cpe05g00918 379 Gene3D Actin; Chain A, domain 4 184 275 - -
Cpe05g00918 379 PANTHER ACTIN 3 3 378 - -
Cpe05g00918 379 PANTHER ACTIN 3 378 IPR004000 -
Cpe05g00918 379 PRINTS Actin signature 65 87 IPR004000 -
Cpe05g00918 379 PRINTS Actin signature 144 163 IPR004000 -
Cpe05g00918 379 PRINTS Actin signature 30 39 IPR004000 -
Cpe05g00918 379 PRINTS Actin signature 53 64 IPR004000 -
Cpe05g00918 379 PRINTS Actin signature 240 256 IPR004000 -
Cpe05g00918 379 PRINTS Actin signature 119 132 IPR004000 -
Cpe05g00918 379 SUPERFAMILY Actin-like ATPase domain 151 379 IPR043129 -
Cpe05g00918 379 ProSitePatterns Actins signature 1. 57 67 IPR004001 -
Cpe05g00918 379 Gene3D - 12 373 - -
Cpe05g00918 379 Pfam Actin 7 379 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00918 Cpe-Chr5:6032163 Cpe11g00097 Cpe-Chr11:521247 0 dispersed
Cpe18g00750 Cpe-Chr18:7247328 Cpe05g00918 Cpe-Chr5:6032163 3.31E-71 transposed
Cpe01g02297 Cpe-Chr1:19396785 Cpe05g00918 Cpe-Chr5:6032163 0 wgd
Cpe10g00886 Cpe-Chr10:4982089 Cpe05g00918 Cpe-Chr5:6032163 0 wgd
Cpe13g00859 Cpe-Chr13:7503106 Cpe05g00918 Cpe-Chr5:6032163 0 wgd
Cpe16g00608 Cpe-Chr16:6696018 Cpe05g00918 Cpe-Chr5:6032163 0 wgd
Cpe19g00354 Cpe-Chr19:3094670 Cpe05g00918 Cpe-Chr5:6032163 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00918 K10355 - han:110894935 750.74