Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00920 ATGGGTAACGGGATTGGGAAGCTCGGCGTTTGCTTCACCGGAATCAGCGACGGGAGGCGGCGGCCGGATATTTCTGCTCTGTTATCGAATCCACTCGATGAAGGGCTTGGACACTCGTTCTGCTATGTCCGGCCGGATCCTTTGAGGCTGTCGTCTTCAAAAGTTCATTCCGATGAAACCACCACTTTCCGATCGATTTCCGGCGCCTCTGTAAGTGCCAATACATCGACGCCTCTTTCTACGGCTCTTGTTGATCTGTATTCGTACAATAGCATTGATCGAGCGGCGGCTTTTGAGAGTTCGACTTCTTTCGCTTCAATTCCTTTGCAGCCGATCCCTAAAAACATGATCAATTCGGGTCCGATTCCGGGTAATTTCAGTGGAATCCCTAGTTCGGGTCCTTTGGAAAGAGGGTTTTTGTCGGGTCCAATTGAGCGAGGGTTTATGTCGGGTCCGTTGGATCGGGGGATTTTTTCGGGTCCTCTTGATAATTCTACTTCTTGCGAATTTCAGAGAAGTTTCTCTCATGGTGGAGGATTTAATTCCAGATCTGGATCGAGAAAAGGCCGGTTAATTCGGATTTTGAGAAGCGTAATTTCGAAGTCGATTTATCGAGGGCAAAATTCGATTGTGGCTCCGATTAAAGCGGTTAAAGAACCCGATTGGATCGTCATGCCCGAGAAACATAATGAGAATTTGACTGTGAGTAGTTTAAATTTCAGTAGTGAGGGAAGTTTGGAAGATGATGATTCAATGGAGAGCCAAAATCTGCAGTGGGCTCAAGGAAAAGCAGGGGAAGATCGTGTTCATGTGGTGGTTTCTGAAGAACATGGTTGGGTTTTCGTCGGGATTTACGATGGATTTAACGGTCCTGATGCTCCTGATTACCTTTTATCGAATCTATACTCCTTTGTTCATAAGGAACTTAAAGGTTTGTTATGGGACGAAAAGCTCGATTCCCCCGGAGTCGCCGCTCCGGCCACTTCCCCTGTTCGATCTGAGCATCATCCTTGTCCAGAAACAAGAGATTGTTCGCAGGTTAACGCTTGTTCTCAGTGTGTTGAACAAGAGAATCATCCTTGTGCTAGTGGCGATGCGAATTCTGGATCGAATTCGAGGAGGAAAAAAGGTAAGAATTCAAGAGGAAAGTTTAAAGGAGCTTCTGAGAAATGGGAGGATAATCAGCGGAAATGGAAGTGCGAATGGGATCAGGAACGATTAGAGCTCGATCGAAGGTTAAAGGAGCAGTTGAATCGATCTGCGTCGTCGAATGGTTCGAGGTCGATTAATCATTCGGATGTTTTGAAAGCTTTGTCCCAGGCATTGAAGAAAACAGAGGAGGCCTATTTGGATATTGCAGACAAGATGCTCGATGAAAATCCTGAACTGGCTTTGATGGGTTCTTGTGTGCTTGTGATGCTTATGAAGGGAGATGATGTTTATGTGATGAACGTTGGCGATAGCCGAGCTGTTTTAGCGCAGAAGGCGGAGCCCGATTATTGGCTCGGGAAGATTCAACAGGATTTGGAGAGGATTAATGAAGAGCCAGTTCATGACATTGAAGCATTAGATGGAGATACAGCATTCACATCAGCTAACCTTACTGCTTTTCAGCTTTCCATGGATCATAGCACCAGTGTTGATGAGGAAGTTCAGAGAATAAAAAATGAACATCCTGATGATGCTGGTGCCGTGATGAACGACCGTGTGAAAGGCTCGTTGAAGGTTACTCGGGCGTTCGGTGCTGGGTTCCTCAAACAGCCTAAATGGAACAATGCACTGTTGGAAATGTTCAGAATCAACTACGTCGGGGGATCGCCATACATCAATTGTCTACCATCTCTCTACCACCACAGATTGGGACCAAAAGACAGGTTTTTGATACTATCATCTGATGGACTCTACCAGTACTTCACAAACGAGGAAGCTGTTTCGGAAGTCGAACTTTTCATCGCCTTGCAACCCGAAGGAGACCCGGCACAACATCTGGTTGAACTACTGCTGTTTCGGGCTGCAAAGAGAGCTGGTATGGATTTCCACGAGTTACTCAAAATACCACAGGGCGACCGGAGGAAGTACCACGACGATGTATCGATCATTGTAATTTCATTAGAAGGGAGGATCTGGAGATCCTGTGTATAA 2142 46.17 MGNGIGKLGVCFTGISDGRRRPDISALLSNPLDEGLGHSFCYVRPDPLRLSSSKVHSDETTTFRSISGASVSANTSTPLSTALVDLYSYNSIDRAAAFESSTSFASIPLQPIPKNMINSGPIPGNFSGIPSSGPLERGFLSGPIERGFMSGPLDRGIFSGPLDNSTSCEFQRSFSHGGGFNSRSGSRKGRLIRILRSVISKSIYRGQNSIVAPIKAVKEPDWIVMPEKHNENLTVSSLNFSSEGSLEDDDSMESQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYSFVHKELKGLLWDEKLDSPGVAAPATSPVRSEHHPCPETRDCSQVNACSQCVEQENHPCASGDANSGSNSRRKKGKNSRGKFKGASEKWEDNQRKWKCEWDQERLELDRRLKEQLNRSASSNGSRSINHSDVLKALSQALKKTEEAYLDIADKMLDENPELALMGSCVLVMLMKGDDVYVMNVGDSRAVLAQKAEPDYWLGKIQQDLERINEEPVHDIEALDGDTAFTSANLTAFQLSMDHSTSVDEEVQRIKNEHPDDAGAVMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRINYVGGSPYINCLPSLYHHRLGPKDRFLILSSDGLYQYFTNEEAVSEVELFIALQPEGDPAQHLVELLLFRAAKRAGMDFHELLKIPQGDRRKYHDDVSIIVISLEGRIWRSCV 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6041286 6044742 - Cp4.1LG05g09160.1 Cpe05g00920 470125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00920 713 Coils Coil 435 455 - -
Cpe05g00920 713 MobiDBLite consensus disorder prediction 358 388 - -
Cpe05g00920 713 PANTHER - 12 713 - -
Cpe05g00920 713 CDD PP2Cc 409 704 IPR001932 -
Cpe05g00920 713 ProSiteProfiles PPM-type phosphatase domain profile. 249 704 IPR001932 -
Cpe05g00920 713 SUPERFAMILY PP2C-like 263 705 IPR036457 -
Cpe05g00920 713 MobiDBLite consensus disorder prediction 320 341 - -
Cpe05g00920 713 Gene3D - 226 709 IPR036457 -
Cpe05g00920 713 PANTHER PROTEIN PHOSPHATASE 2C 12 713 IPR015655 GO:0004722|GO:0006470
Cpe05g00920 713 SMART PP2C_4 250 702 IPR001932 -
Cpe05g00920 713 Pfam Protein phosphatase 2C 415 653 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01365 Cpe-Chr3:11023353 Cpe05g00920 Cpe-Chr5:6041286 4.82E-70 dispersed
Cpe05g00920 Cpe-Chr5:6041286 Cpe08g00188 Cpe-Chr8:1268820 4.26E-72 dispersed
Cpe14g00885 Cpe-Chr14:7339290 Cpe05g00920 Cpe-Chr5:6041286 1.29E-172 transposed
Cpe10g00887 Cpe-Chr10:4986613 Cpe05g00920 Cpe-Chr5:6041286 2.76E-24 wgd
Cpe16g00609 Cpe-Chr16:6698901 Cpe05g00920 Cpe-Chr5:6041286 0 wgd
Cpe19g00351 Cpe-Chr19:3077215 Cpe05g00920 Cpe-Chr5:6041286 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00920 - - csv:101222644 1304.66