Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00925 ATGGCCGCCATTATTTCTCTCTGCATTGCTTCTCTGCTCCCATTTTTCCTAGCTGTTGACGCTAGAATCCCCGGCGTTTACACCGGCGGCGCCTGGCAGAATGCTCATGCCACCTTCTACGGCGGTTCTGACGCTTCCGGCACCATGGGCGGAGCTTGTGGGTATGGGAATTTGTACAGCCAAGGGTATGGAGTCAACACGGCGGCGCTAAGTACGGCTCTGTTCAACAATGGGCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGTGCTAATGACCCAAAATGGTGCCATTCCGGTAGCCCCTCAATCTTGGTTACTGCTACCAATTTCTGCCCGCCGAATTATGCTCTTCCAAACGACAATGGCGGCTGGTGTAACCCTCCTCGGAGCCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATCGCCGAATACCGTGCCGGAATTGTTCCCGTCGCTTACCGCCGAGTGCCATGCCGGAAGCAGGGAGGAATCAGGTTCACGATCAACGGTTTCCGTTACTTCAACCTGGTTTTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGCGGGCTAGCGTTAAAGGATCAAAAACCGAGTGGATGAGCATGACGAGAAACTGGGGGCAAAACTGGCAATCCAACGCCGTGTTAGTGGGCCAGGCTTTGTCGTTTAGAGTGACCGGCAGTGACCGGCGAACCTCAACGTCTTGGAACATCGTGCCCGCCAATTGGCAGTTCGGCCAGACTTTCACCGGAAAAAACTTCCGTGTTTAA 777 54.18 MAAIISLCIASLLPFFLAVDARIPGVYTGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGQSCGACFEIKCANDPKWCHSGSPSILVTATNFCPPNYALPNDNGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRASVKGSKTEWMSMTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPANWQFGQTFTGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6080077 6081497 - Cp4.1LG05g09340.1 Cpe05g00925 470130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00925 258 Gene3D - 164 256 IPR036749 -
Cpe05g00925 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Cpe05g00925 258 PANTHER EXPANSIN 5 257 - -
Cpe05g00925 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Cpe05g00925 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Cpe05g00925 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Cpe05g00925 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Cpe05g00925 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Cpe05g00925 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Cpe05g00925 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Cpe05g00925 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Cpe05g00925 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Cpe05g00925 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Cpe05g00925 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Cpe05g00925 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Cpe05g00925 258 PANTHER EXPANSIN-A15 5 257 IPR002963 GO:0009664
Cpe05g00925 258 Gene3D - 20 160 IPR036908 -
Cpe05g00925 258 SMART dpbb_1 67 154 IPR007112 -
Cpe05g00925 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Cpe05g00925 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Cpe05g00925 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Cpe05g00925 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Cpe05g00925 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Cpe05g00925 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Cpe05g00925 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Cpe05g00925 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00925 Cpe20g00823 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00951 Cpe-Chr3:7163209 Cpe05g00925 Cpe-Chr5:6080077 3.42E-96 dispersed
Cpe05g00925 Cpe-Chr5:6080077 Cpe13g01039 Cpe-Chr13:8521044 8.86E-124 dispersed
Cpe08g00789 Cpe-Chr8:6263251 Cpe05g00925 Cpe-Chr5:6080077 2.10E-94 dispersed
Cpe13g00190 Cpe-Chr13:1485047 Cpe05g00925 Cpe-Chr5:6080077 4.59E-73 dispersed
Cpe01g00826 Cpe-Chr1:4910298 Cpe05g00925 Cpe-Chr5:6080077 1.03E-82 transposed
Cpe10g00250 Cpe-Chr10:1461913 Cpe05g00925 Cpe-Chr5:6080077 4.10E-103 transposed
Cpe01g02305 Cpe-Chr1:19451816 Cpe05g00925 Cpe-Chr5:6080077 3.53E-89 wgd
Cpe01g01088 Cpe-Chr1:6418949 Cpe05g00925 Cpe-Chr5:6080077 1.59E-66 wgd
Cpe01g00178 Cpe-Chr1:1002796 Cpe05g00925 Cpe-Chr5:6080077 4.42E-96 wgd
Cpe10g00890 Cpe-Chr10:5008797 Cpe05g00925 Cpe-Chr5:6080077 1.66E-96 wgd
Cpe16g00619 Cpe-Chr16:6736333 Cpe05g00925 Cpe-Chr5:6080077 1.97E-180 wgd
Cpe19g00348 Cpe-Chr19:3058720 Cpe05g00925 Cpe-Chr5:6080077 1.09E-96 wgd
Cpe02g01228 Cpe-Chr2:11088874 Cpe05g00925 Cpe-Chr5:6080077 4.17E-98 wgd
Cpe20g00823 Cpe-Chr20:7443824 Cpe05g00925 Cpe-Chr5:6080077 4.92E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00925 - - csv:101203979 505.368