Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00957 ATGGCGCCAACAGCCACCGGATCCTTCTGCAACAAATTCCTTGCACTTTTACTTCTAATTCTCCACGTCGGCTGCTTTCTTTTAACCAATGGTGACAACCGCCGCCGCCGCCACCGTCCCCTGCAGCCGAAGAAGCGTAATGAATCTCCTCCGACGGCGTTGAGTCTGAAGCCGCAAAAAGCCCTAACCTCATCCATTTCATTTCTCAAACGAATTTTTTCTTCCAAAACGTGCAAAATGGCAATCGAGACGACTCGTCCTCCCTCGACTCCGGCTCGATCGTCGCAGCACTCGATCGTCACGCTTATTCCTCAGCCGGTGGATACTCCGAACTCCAAGAACGCTAATCCGATTGATTCTGCTGGAACGCCACAGGATTCCGATATCACTACGGCGGAGATCAACCAATTTTTTCCCCTTCGTAACGATATCTTCCCCTGCACTGCTTGCGGCGAGATTTTCCCCAAGCCTCAAGTGCTCGAACAGCATCAAGCGGCTAAACACGCCGTGTCGGAGCTTGCAGATTCGGATTCCGGTAAGAATATTGTTCGGATCATTTTCGAAACTGGATGGACGAGTAGAGAAAAAAGCCCGAAGATCCTCCGAATCTTGAAAATCCACAACAGTCAAAAGATTCTCTCCAGATTCGAGGAATATAGAGAGTCGGTGAAGGCTAAAGCGGCCCGAAACGGCGGCGCTGTAAAGCGATGGGATGAACGGTGCATCGCCGATGGGAACGAGCTTCTGAGATTTCACTGTTCGACGTTTTTGTGCGATTTGGGGCAAAACGGTAATTCCAGCATCTGCGGGCAGCAATTTTGTAGTATTTGTGGGATAATCAAATCGGGATTCTCACACAAGTTGGATGGAATTTCTACGCTATCAAGTAGCTGGAGAGCACACGTGGCAATCCCTGAGGACATCGAAGAGGAGTTCAAGTTCATGAACGTGAAACGGGCGATTCTGGTTTGCCGGGTCGTGGCCGGCCGGATCGGGTCCGACAACGACGAGCCGGAGAAAGACGGCGGTGGGTTTGACTCCGTAGTCGGCCGAAGTGGGAGTGGGGCCCAGACGACGGTGGATGAAGAAGAGCTGTTGGTTTTCAATCCGAGGGCTGTGCTCCCCTGCTTCGCGATTGTGTACGAAGTCTGA 1152 51.82 MAPTATGSFCNKFLALLLLILHVGCFLLTNGDNRRRRHRPLQPKKRNESPPTALSLKPQKALTSSISFLKRIFSSKTCKMAIETTRPPSTPARSSQHSIVTLIPQPVDTPNSKNANPIDSAGTPQDSDITTAEINQFFPLRNDIFPCTACGEIFPKPQVLEQHQAAKHAVSELADSDSGKNIVRIIFETGWTSREKSPKILRILKIHNSQKILSRFEEYRESVKAKAARNGGAVKRWDERCIADGNELLRFHCSTFLCDLGQNGNSSICGQQFCSICGIIKSGFSHKLDGISTLSSSWRAHVAIPEDIEEEFKFMNVKRAILVCRVVAGRIGSDNDEPEKDGGGFDSVVGRSGSGAQTTVDEEELLVFNPRAVLPCFAIVYEV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6245315 6246466 + Cp4.1LG05g09500.1 Cpe05g00957 470162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00957 383 ProSitePatterns Zinc finger C2H2 type domain signature. 147 168 IPR013087 -
Cpe05g00957 383 SUPERFAMILY ADP-ribosylation 171 382 - -
Cpe05g00957 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 173 IPR013087 -
Cpe05g00957 383 Gene3D - 187 383 - -
Cpe05g00957 383 MobiDBLite consensus disorder prediction 335 355 - -
Cpe05g00957 383 PANTHER NUCLEIC ACID BINDING PROTEIN 5 381 - -
Cpe05g00957 383 MobiDBLite consensus disorder prediction 34 59 - -
Cpe05g00957 383 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 5 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00957 Cpe-Chr5:6245315 Cpe06g00072 Cpe-Chr6:351484 7.78E-59 dispersed
Cpe05g00957 Cpe-Chr5:6245315 Cpe13g00599 Cpe-Chr13:5862624 9.89E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49551 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00957 - - csv:101205506 593.193