Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00970 ATGGTGTGCAATGGTTGTAATAGCAATTCTGTAAGCCCCAACTTCATGATGGATGGTTGCAATAGAAATCTGGGGTTTTGTATATCGGTTTTGCTCGAATTTTCGGCCACGGATGATCTGATTGGATTTAGGAGTGCTGTTGAGGAAGATGGTCATGATATTGATGAAGCAAGTTTGTGGAGGAAGGCGTTACAACAGTTGCTCAAGGGATATGGTAACGATGAGGACGTTCTTGGTTCATCTGAGATGATTTTTTACGAGAGGGAAACACAGGAGGCACGGGAGGTTTTGACGCCTCGTTTTTCGAGAGATGGAACGGAGAAGAAAGAGTATCCAGTTGATCACTCGCTTCCCGACATCAAGAATGGGATTTATAGTACAGATGAGTTTAGAATGTATACTTTTAAGATCAAACCTTGTACAAGAGCTTACTCCCATGATTGGACAGAGTGCCCGTTTGTTCACCCTGGCGAAAACGCAAGAAGGCGGGATCCTAGGAAATACCATTACAGCTGCGTCCCGTGTCCCGAATTTAGAAAGGGCGCATGTAGGCAGGGGGATGCCTGTGAATATGCTCATGGAATCTTTGAATGTTGGCTCCATCCTGCTCAATACCGCACCCGTCTTTGCAAGGACGAAACGGGATGCATCCGAAAGGTCTGTTTCTTTGCTCACAAACCAGAGGAGCTACGCCCCTTGTATGCTTCGACTGGTTCTGCTGTACTGTCCCCAAGATCGATCTCTGGTTCGTCACTAGACATTCCATCAATCAGCCTGCTTACCCTTGGTTCTCCGTCATCGACTCCGCCGTTGACTCCTGGAGTTTCTTCTCCGCTGGGTGGAACCATGTGGCAGACTCAATGTAATATTGCGCCTCCGACGTTGCAGCTTCCGGGTAGCCGGTTGAAGGCTGCTTTGAGTGCAAGAGACATGGATTTAGATGCCGAGTTACTCGGTCTCGAAAGTCAGCGACGTAGACAGCAACAGTTTATGGACGAGTTATCGTGTCTACCTTCCCCTTCCAGATGGAACAATGGCATACCAACCCCTACATCTTTTCCATCTCCAAGGAGTAGAAATGGAGAATTGAACGGGCTCGGAGGCATGAATCCTACTAACCTCGAGAACATTTACGGATCATCGGTAGATCCCGCACTCTTCCCTCAATTACAAGGACTCTCGCTCGATTCCGTGCAATCCCCGTCCGGGATGCGCCAAAGCCTGAACCAGTCATTCCTATCAAACTATGCTAACAGCATTGGATCTCCTCCTGCAAGGTCATCTCAACCATTTGGCCATGACTCATCTGTGTCTGCTGCAGAAAGCCTTCTGAGTTCCAGGGCTGCTGCTTTCGCCAAGCGCAGCCACAGCTTTATCGAACGCGGTGTCGTGAACCGTCATTCTGGACATTCACCTCCAGCTACATCTACAACCGTCACGCCTTCGAACTTCCCTGATTGGGGTTCGCCCAACGGAAAACTAGACTGGGGAATTCACGGAGAAGAACTCACCAAGTTAAGAAAGTCTGCATCATTCGGGCTACGAAGTAATTCCCTCGCAACACCTGCAATGCACGCTACTTCTTCCAAGCCAGACGTCTCCTGGGTTCAGTCCCTGGTGAACGATGCTCCAACCGAGAACTCCGTGCAGTTGAGCATGGACGAGCAGCAGCAGCAGCAGCAGCTTTGTCATATCGACAATGGGGATTCAAAGCTGTACATGGAACAGAAGCAGCTGGTCGCTTAA 1746 49.31 MVCNGCNSNSVSPNFMMDGCNRNLGFCISVLLEFSATDDLIGFRSAVEEDGHDIDEASLWRKALQQLLKGYGNDEDVLGSSEMIFYERETQEAREVLTPRFSRDGTEKKEYPVDHSLPDIKNGIYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGACRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCIRKVCFFAHKPEELRPLYASTGSAVLSPRSISGSSLDIPSISLLTLGSPSSTPPLTPGVSSPLGGTMWQTQCNIAPPTLQLPGSRLKAALSARDMDLDAELLGLESQRRRQQQFMDELSCLPSPSRWNNGIPTPTSFPSPRSRNGELNGLGGMNPTNLENIYGSSVDPALFPQLQGLSLDSVQSPSGMRQSLNQSFLSNYANSIGSPPARSSQPFGHDSSVSAAESLLSSRAAAFAKRSHSFIERGVVNRHSGHSPPATSTTVTPSNFPDWGSPNGKLDWGIHGEELTKLRKSASFGLRSNSLATPAMHATSSKPDVSWVQSLVNDAPTENSVQLSMDEQQQQQQLCHIDNGDSKLYMEQKQLVA 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6326093 6328150 + Cp4.1LG05g09690.1 Cpe05g00970 470175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00970 581 MobiDBLite consensus disorder prediction 464 486 - -
Cpe05g00970 581 PANTHER UNKEMPT FAMILY MEMBER 26 60 IPR045234 -
Cpe05g00970 581 Gene3D - 171 232 - -
Cpe05g00970 581 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 26 60 - -
Cpe05g00970 581 MobiDBLite consensus disorder prediction 341 366 - -
Cpe05g00970 581 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 64 579 - -
Cpe05g00970 581 ProSiteProfiles Zinc finger C3H1-type profile. 174 196 IPR000571 GO:0046872
Cpe05g00970 581 MobiDBLite consensus disorder prediction 469 486 - -
Cpe05g00970 581 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 174 194 IPR000571 GO:0046872
Cpe05g00970 581 PANTHER UNKEMPT FAMILY MEMBER 64 579 IPR045234 -
Cpe05g00970 581 SMART c3hfinal6 204 227 IPR000571 GO:0046872
Cpe05g00970 581 SMART c3hfinal6 169 195 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00970 Cpe-Chr5:6326093 Cpe08g01381 Cpe-Chr8:9920910 1.62E-109 dispersed
Cpe01g01032 Cpe-Chr1:6109429 Cpe05g00970 Cpe-Chr5:6326093 0 wgd
Cpe01g00128 Cpe-Chr1:738386 Cpe05g00970 Cpe-Chr5:6326093 5.45E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49552 PF00642 zf-CCCH 0.00029 CL0537 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00970 - - mcha:111017050 778.089