Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe05g00986 | ATGGGAGCTGGTTCCTCGCCATGCGCCTCCTGCAAATTGCTACGGCGGCGGTGCGCCAAGGACTGCATTTTCGCCCCTTATTTCCCTCCCGACGACCCCTACAAGTTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGAGCTGCCGCTGGATCAAAGACCCGATGCCGTGAACAGTATGGTATATGAAGCGAGTGCTAGAATGCGAGACCCGGTTTATGGATGTGTAGGAGCCATCACATTCCTCCAAAACCAAGTGTCCCGATTGGAAATGCAACTGGCGGCGGCGCAGGCGGAGATTTTGAGCTTTCAGATGCAACAACAGGCGGCTCCGGCGAGTTTTCCGATGACCCAGATGAACCAATATGATCAAAATCTTGTTTTTCTATCAAATGCTGATTCTTTTAATTCCGTTGATGGTTCGCCGGAAGTTGAAGATTATTGCTCTCTGTGGAGTTGA | 480 | 50.83 | MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPASFPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS | 159 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 6418129 | 6418608 | - | Cp4.1LG05g09850.1 | Cpe05g00986 | 470191 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe05g00986 | 159 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
| Cpe05g00986 | 159 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 125 | - | - | |
| Cpe05g00986 | 159 | Coils | Coil | 86 | 113 | - | - | |
| Cpe05g00986 | 159 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 12-LIKE | 1 | 125 | - | - | |
| Cpe05g00986 | 159 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe04g00856 | Cpe-Chr4:7887266 | Cpe05g00986 | Cpe-Chr5:6418129 | 2.85E-53 | dispersed | |
| Cpe05g00986 | Cpe-Chr5:6418129 | Cpe05g01559 | Cpe-Chr5:10711597 | 1.62E-56 | dispersed | |
| Cpe14g00127 | Cpe-Chr14:687641 | Cpe05g00986 | Cpe-Chr5:6418129 | 7.25E-40 | transposed | |
| Cpe01g01020 | Cpe-Chr1:6038761 | Cpe05g00986 | Cpe-Chr5:6418129 | 3.82E-66 | wgd | |
| Cpe01g00107 | Cpe-Chr1:624799 | Cpe05g00986 | Cpe-Chr5:6418129 | 9.78E-30 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49555 | PF03195 | LOB | 2.20E-40 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe05g00986 | - | - | csv:101207667 | 234.187 |