Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00987 ATGGCTACCGAGGCGACTGAAGCTACGACTAAGTTTCAGAGTCCGGGTTTTCGCCCGGTACCGTCGCCTCCGGATTTCCATCCCGAAATTATTGTCTCAACCCATGATGGTCTCCGGTTCTGGCAGTTCATGATTGCCGGTTCAGTCGCGGGGTCTGTGGAGCATATGGCTATGTTTCCGGTTGATACCGTCAAGACCCATATGCAAGCCCTTGGTTCTTGTCCGATTAAATCTGTTGGAGTTCGACAAGCCCTTCGGTCAATTTTGAAGTCAGAGGGACCTGCTGGTTTTTATCGGGGTATTGGTGCTATGGGCCTCGGAGCTGGTCCTGCACATGCTGTGTATTTTACAGTTTACGAGAATTGTAAAAGGGTTTTCTCTGGTGGGGATCCTAATAATTCAGTAGCCCACGCTGCTTCTGGTGTCTGTGCGACGGTGGTGAGTGATGCTGTCTTTACACCGATGGATATGGTTAAACAGAGGCTGCAGCTGAGTAATAGTCCTTACAAGGGAGTTTTGGATTGTGTCAAAAGGGTCCTAAGAGACGAGGGTTTTAAAGCATTTTACGCTTCATATAGAACTACAGTGTTAATGAATGCTCCATTTACTGCTGTGCATTTTGCAACTTATGAAGCTGCAAAGAGAGGTTTAATGGAGGTTTCGCCAGAGAGTGCTAATGATGAACAGTGGATTGCTCATGCGACAGCAGGAGCTGCTGCTGGAGCTTTAGCTGCACTTGTTACAACGCCGCTTGATGTGGTTAAGACTCAATTACAATGTCAGGGTGTATGTGGATGCGATAGATTCAAAAGTGGGTCGATTGGGGACGTGATTCAAACGATACTGAAGAAGGATGGATATGGAGGGCTTATGAGGGGATGGGTTCCAAGGATGCTGTTCCATACGCCCGCTGCAGCCATTTGCTGGTCGACATACGAAGCAATAAAATCGTTCTTCCAAGACCTCAACAGCAGCAGTGACAATGTAACCTGA 993 47.73 MATEATEATTKFQSPGFRPVPSPPDFHPEIIVSTHDGLRFWQFMIAGSVAGSVEHMAMFPVDTVKTHMQALGSCPIKSVGVRQALRSILKSEGPAGFYRGIGAMGLGAGPAHAVYFTVYENCKRVFSGGDPNNSVAHAASGVCATVVSDAVFTPMDMVKQRLQLSNSPYKGVLDCVKRVLRDEGFKAFYASYRTTVLMNAPFTAVHFATYEAAKRGLMEVSPESANDEQWIAHATAGAAAGALAALVTTPLDVVKTQLQCQGVCGCDRFKSGSIGDVIQTILKKDGYGGLMRGWVPRMLFHTPAAAICWSTYEAIKSFFQDLNSSSDNVT 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6421710 6425464 + Cp4.1LG05g09800.1 Cpe05g00987 470192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00987 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 318 IPR018108 -
Cpe05g00987 330 Pfam Mitochondrial carrier protein 228 321 IPR018108 -
Cpe05g00987 330 Pfam Mitochondrial carrier protein 133 219 IPR018108 -
Cpe05g00987 330 Pfam Mitochondrial carrier protein 38 127 IPR018108 -
Cpe05g00987 330 PANTHER MITOCHONDRIAL CARRIER PROTEIN, EXPRESSED 5 326 - -
Cpe05g00987 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 125 IPR018108 -
Cpe05g00987 330 PRINTS Mitochondrial carrier protein signature 43 56 IPR002067 GO:0055085
Cpe05g00987 330 PRINTS Mitochondrial carrier protein signature 56 70 IPR002067 GO:0055085
Cpe05g00987 330 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085
Cpe05g00987 330 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085
Cpe05g00987 330 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085
Cpe05g00987 330 Gene3D Mitochondrial carrier domain 167 330 IPR023395 -
Cpe05g00987 330 PANTHER MITOFERRIN-1-RELATED 5 326 - -
Cpe05g00987 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 216 IPR018108 -
Cpe05g00987 330 Gene3D Mitochondrial carrier domain 26 166 IPR023395 -
Cpe05g00987 330 SUPERFAMILY Mitochondrial carrier 36 314 IPR023395 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00987 Cpe16g00674 CCT
Cpe05g00987 Cpe16g00674 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00987 Cpe-Chr5:6421710 Cpe19g00268 Cpe-Chr19:2232260 4.15E-144 dispersed
Cpe01g02106 Cpe-Chr1:17815269 Cpe05g00987 Cpe-Chr5:6421710 3.29E-10 transposed
Cpe10g00970 Cpe-Chr10:5487159 Cpe05g00987 Cpe-Chr5:6421710 1.25E-12 wgd
Cpe16g00674 Cpe-Chr16:7025832 Cpe05g00987 Cpe-Chr5:6421710 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00987 K15113 - csv:101215924 608.986