Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00995 ATGATGACATGTGAATCCAGAATATTTCACCAGCCGAACATGAATTCTCCGTCGGGGCAATCACGGCAGCACCTCCCTGCACCGCGTAATCGCGGGAAGTTCCAATCGGAGGCGGAGAGATTGAGCGCCGACGTTGGAGGACTGGAAGATTCATTGTTTCAGATGGTAAATGATCACCAGTACGCCTCTCTCAAGCTCCGAGAGAACTCCGAGAAGGCGAAGAAAGATGCTATTCAGAAGGCGGTGCGCGTTTCGGATCTGTTAGTCGATGCCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTTGAAATTAGGGCTTTATCGACCACGATTACCCGATTTATGAAGCAGACCGATCAATGGCTCGCCGCCACTCACGCTCTGAACACTGCTGTTAAGGTTGAGTTGAGGGTGAAGCAGGCTCCGGTCAAAGTCCGTGTTGAGGAGGATCCCACCGACGGCCGTCCCAGACTGCCGGAGAGTACGGCGCCGCCCATTTCATCTAAGTTCAGTTCGACTCCGAACCCGAATCCGCCATTGTTGTCGGCCATGTCTCAGCCTCTGTTCTCCCCTTCTTCCTTCTTCACTATCCCTCCAGGGATCAGCCCCACCCAACTTCTTGATTCCCCTGTTCTTCTTACCTCCTCTAATGCATCGCCGACCACCGGAGCAATTTCGACTGGCCACCACCAAAAGAACATGAAACAAGAACAACATAACTTAGCTGAGTTCTCATTTCCTCGTACAAATCCCACAAAATCATCATCTTCATCATCAATTATGTTTCAATCGTCTTCAATGCAGCAAAATCCGCCATGGGTATCTCAAGCCGCCTTCAATTTCCCGCCGGAGACCACCGTGAACGGCGGTTCGAAATCCGACCAGCACCCACAATCTCAACCAAAAAACAGAACATCAGACGACGGGTATAATTGGAGGAAATACGGCCAAAAACTTGTAAAAGGAAGTGAAAATCCCAGAAGCTATTACAAATGTACGCACCCTACTTGCCCTGTTAGAAAGCAAGTCGAAAAATCATTGAACGGCCAAATCACAGAAATTGTTTACAAAAGTAAACACAATCATCCAAAACCAGAGTTCCCAAGAAGATCATCATCGGCTTCTTCTTCCTCTTCTTCATGGCTATCACAAGCTTTACCTCAAACAATGGCGGCAGAGCCAAAGCATTCAATGGCCTCTGATTCCATTCCGACGCCGGAGAACTCTTCAACCACGATTGGGGATGATGATTCCGATGAACTTGATGCAAAAAGATGGAAAAGCGAGAGCGAGAACGAAATTATATCGGTCGCCGGAGGTAAAACGGTGAGAGAACAGAGGGTTGTGGTTCAAACGATTAGTAGAGTTGATAAACTAGACGATGGATATTGGTGGAGAAAATATGGACAGAAAGTTTGCACGTACGCAGGCTGTGGAGTGAGAAAGCACATAGAGAGGGCGTCCCACGATTTAAAGGCCGTCATCACTACCTACGAAGGCAAGCATAACCATGAAATTCCGGCAGCCCGCGGCGGAGGTAGCAGACCAGTATCCAATAATCATGGCAATGACAACGGTCATGCATCAAACGGCGCCGGCGACGTATGGCCGAGTTCCGAGATTTCTGGTGGTGATGATGGATTCTCTAACATGCTGTGGAGGACCAAAGAAGAGGCCGCCGATGAGATTTTCCGATCGTTGTTAGACTGA 1728 48.67 MMTCESRIFHQPNMNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEDSLFQMVNDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHALNTAVKVELRVKQAPVKVRVEEDPTDGRPRLPESTAPPISSKFSSTPNPNPPLLSAMSQPLFSPSSFFTIPPGISPTQLLDSPVLLTSSNASPTTGAISTGHHQKNMKQEQHNLAEFSFPRTNPTKSSSSSSIMFQSSSMQQNPPWVSQAAFNFPPETTVNGGSKSDQHPQSQPKNRTSDDGYNWRKYGQKLVKGSENPRSYYKCTHPTCPVRKQVEKSLNGQITEIVYKSKHNHPKPEFPRRSSSASSSSSSWLSQALPQTMAAEPKHSMASDSIPTPENSSTTIGDDDSDELDAKRWKSESENEIISVAGGKTVREQRVVVQTISRVDKLDDGYWWRKYGQKVCTYAGCGVRKHIERASHDLKAVITTYEGKHNHEIPAARGGGSRPVSNNHGNDNGHASNGAGDVWPSSEISGGDDGFSNMLWRTKEEAADEIFRSLLD 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6508052 6517477 - Cp4.1LG05g09980.1 Cpe05g00995 470200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00995 575 ProSiteProfiles WRKY domain profile. 460 513 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe05g00995 575 MobiDBLite consensus disorder prediction 362 435 - -
Cpe05g00995 575 MobiDBLite consensus disorder prediction 1 25 - -
Cpe05g00995 575 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 172 531 IPR044810 GO:0003700
Cpe05g00995 575 SUPERFAMILY WRKY DNA-binding domain 457 513 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe05g00995 575 MobiDBLite consensus disorder prediction 170 190 - -
Cpe05g00995 575 MobiDBLite consensus disorder prediction 1 33 - -
Cpe05g00995 575 MobiDBLite consensus disorder prediction 153 190 - -
Cpe05g00995 575 MobiDBLite consensus disorder prediction 374 393 - -
Cpe05g00995 575 Pfam GCN5-like protein 1 (GCN5L1) 55 139 IPR009395 GO:0031083
Cpe05g00995 575 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 172 531 - -
Cpe05g00995 575 SUPERFAMILY WRKY DNA-binding domain 309 371 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe05g00995 575 MobiDBLite consensus disorder prediction 252 318 - -
Cpe05g00995 575 Gene3D WRKY domain 450 514 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe05g00995 575 Gene3D WRKY domain 297 372 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe05g00995 575 MobiDBLite consensus disorder prediction 508 546 - -
Cpe05g00995 575 Pfam WRKY DNA -binding domain 313 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe05g00995 575 Pfam WRKY DNA -binding domain 466 511 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe05g00995 575 MobiDBLite consensus disorder prediction 252 312 - -
Cpe05g00995 575 ProSiteProfiles WRKY domain profile. 313 371 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe05g00995 575 SMART WRKY_cls 312 370 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe05g00995 575 SMART WRKY_cls 465 512 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01138 Cpe05g00995 CCT
Cpe02g01138 Cpe05g00995 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00029 Cpe-Chr3:148105 Cpe05g00995 Cpe-Chr5:6508052 2.08E-81 dispersed
Cpe05g00995 Cpe-Chr5:6508052 Cpe14g00767 Cpe-Chr14:6036846 2.50E-61 dispersed
Cpe05g00995 Cpe-Chr5:6508052 Cpe08g00850 Cpe-Chr8:6729186 1.30E-65 transposed
Cpe05g00995 Cpe-Chr5:6508052 Cpe01g01491 Cpe-Chr1:8901402 7.71E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49556 PF06320 GCN5L1 1.80E-23 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00995 K13424 - tcc:18591046 359.762