Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00997 ATGAGCTTAAACCAAGCTTCCATCTTAATCCTCTCCATTAATCCTCGATCTCGAGATTTTGCTGCTCTTAACCACAAGCCGCCTCTTCGCTTAACCAAAACGATTGGGATGGATAATAAGCAGATTGTGGTGGTTCAAAGATATGAATTAGGGAGATTACTCGGCCAAGGAACCTTTGCGAAGGTATATTATGCGAGAAATACAGAAACTAATCAAAGCGTGGCCATTAAGGTGATCGATAAAGAAAAGATCACGAAGGCTTCGCTAATAGATCAAATTAAGCGTGAAATATCTATTATGCGACTTGTTAGGCATCCTAATATTATACATCTATATGAGGTTATGGCCACCAAGACTAAGATCTACTTCGCCTTGGAATATGCTAAAGGCGGTGAGCTCTTTGACAAGGTTGCTAAAGGGAGGCTGAGGGAAGAAGTTGCTTGGAAATACTTTTATCAGTTGATCAATGCTGTTGATTTTTGTCACAGTAGGGGAGTATATCACCGTGATATAAAGCCAGAGAACCTACTTCTTGATGAAAATGAGAATCTTAAGGTGTCTGATTTTGGTTTAAGTGCTTTAGCCGAGTCCAAGCGCCAAGATGGGTTGCTACACACTACTTGTGGTACTCCAGCTTATGTTGCTCCTGAAGTCATCAATAGGAAGGGCTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGCAGTCTTGTTCGTCTTATTGGCAGGTTATCTCCCATTCCACGATTCAAATTTAATGGAGATGTATAGGAAGATTGGAAAAGCGGACTATAAATGCCCTAGTTGGTTCCCTCGTGATGTACGTCGGCTGCTTATGAGGATGCTTGATCCAAACCCCGCTACTAGAACTTCCATAGCAATGATAAGGCAAAGTTCCTGGTTCAAAAAAGGATTGAGGTTTAAGATGTTAAGAAGTGAAACAGGAAGTGATGCTAAAGCGAGTGAAGATGCAGCAGCTGTTTCTGGACCATCAGAGAGTAGTAGTGTGTTAGCAGATGGAAATCAAGAGCCAGATAGACCTCCGACGTTGAACGCTTTCGATATCATCTCCCTTTCTGCTGGGTTCAATCTATCCAGTTTATTTGAAGACAACTCAAAGAGGAAAGAAACATTGTTTACTTGTAGAAAACCGGCCTCTGTTATTCTCTCCAAGCTAGAAGATATCGCTAAACTTCTCAGGTTTCGGGTGCAGAAGAAGGAAGCAGGCCTACTGAAGTTCGAGGCGCTGACAGAGGGTAAAAAGGGGCCTTTGTCCATTGATACAGAGATATTTGAGATTACTCCATCCTTCTATTTGGTGGAGATGAAAAAATCCAATGGGGACACATTGGAGTATCAGAAGATATTAAAAGAGGACATAAGACCAGCTCTACAGGATATTGTATGGGTATGGCGAGCCGAGCAGGAGCAGGAGCAGGAGCAGCAGCAACAACAGCCTCAGCCTCCGCCTCCGCATCAGCCTCTCGAACTGCAGGATCGGGATCCATATCTGGACCAAGAGGGTGTGTCACAACAGCAGTAG 1545 43.43 MSLNQASILILSINPRSRDFAALNHKPPLRLTKTIGMDNKQIVVVQRYELGRLLGQGTFAKVYYARNTETNQSVAIKVIDKEKITKASLIDQIKREISIMRLVRHPNIIHLYEVMATKTKIYFALEYAKGGELFDKVAKGRLREEVAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGAVLFVLLAGYLPFHDSNLMEMYRKIGKADYKCPSWFPRDVRRLLMRMLDPNPATRTSIAMIRQSSWFKKGLRFKMLRSETGSDAKASEDAAAVSGPSESSSVLADGNQEPDRPPTLNAFDIISLSAGFNLSSLFEDNSKRKETLFTCRKPASVILSKLEDIAKLLRFRVQKKEAGLLKFEALTEGKKGPLSIDTEIFEITPSFYLVEMKKSNGDTLEYQKILKEDIRPALQDIVWVWRAEQEQEQEQQQQQPQPPPPHQPLELQDRDPYLDQEGVSQQQ 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6525607 6528162 + Cp4.1LG05g09940.1 Cpe05g00997 470202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00997 514 Pfam NAF domain 348 406 IPR004041 GO:0007165
Cpe05g00997 514 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Cpe05g00997 514 CDD STKc_SnRK3 47 301 - -
Cpe05g00997 514 PANTHER - 38 485 - -
Cpe05g00997 514 Gene3D Kinase associated domain 1, KA1 346 471 - -
Cpe05g00997 514 CDD CIPK_C 352 466 - -
Cpe05g00997 514 MobiDBLite consensus disorder prediction 476 514 - -
Cpe05g00997 514 MobiDBLite consensus disorder prediction 317 344 - -
Cpe05g00997 514 Pfam Protein kinase domain 48 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g00997 514 SMART serkin_6 48 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g00997 514 Gene3D Transferase(Phosphotransferase) domain 1 38 342 - -
Cpe05g00997 514 ProSiteProfiles Protein kinase domain profile. 48 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g00997 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Cpe05g00997 514 SUPERFAMILY Protein kinase-like (PK-like) 44 303 IPR011009 -
Cpe05g00997 514 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 38 485 - -
Cpe05g00997 514 ProSiteProfiles NAF domain profile. 346 370 IPR018451 GO:0007165
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00997 Cpe16g00683 CCT
Cpe05g00997 Cpe16g00683 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00993 Cpe-Chr2:9008315 Cpe05g00997 Cpe-Chr5:6525607 3.93E-12 dispersed
Cpe05g00997 Cpe-Chr5:6525607 Cpe19g00146 Cpe-Chr19:1152168 0 dispersed
Cpe20g00539 Cpe-Chr20:3136138 Cpe05g00997 Cpe-Chr5:6525607 1.27E-168 dispersed
Cpe10g00992 Cpe-Chr10:5638980 Cpe05g00997 Cpe-Chr5:6525607 0 wgd
Cpe16g00683 Cpe-Chr16:7088889 Cpe05g00997 Cpe-Chr5:6525607 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62429 PF00069 Pkinase 1.10E-73 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00997 - - csv:101206404 787.719