Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01001 ATGTTCAAGAATTCCAAATCGGAATATGGGTATGTTGAGACCGATCCGACTAGTCGTTACGGCCGTTTTGAAGAAGTGTTGGGAAAAGGGGCCATGAAGACAGTGTATAAAGCCATTGATGAGTTTCTAGGGATAGAGGTGGCGTGGAGTCGGGTGAAACTCAACGAGGTTCTCCGATCACCGGAGGATTTGCAGCGGTTGTATTCCGAGGTTCACTTACTTAGCACGCTTAAGCATGAATCCATCATGCAGTTCTACACTTCATGGATTGATGTTGATCACAAAACCTTTAACTTTATTACCGAACTCTTTACTTCTGGAACGCTTAGAGAATATGGGAAGAGATATAGCCAAGTTGATATTAGAGCTATTAAGAGCTGGGCGCGCCAGATCCTGTTGGGGCTCGTTTATTTGCACGAGCACGATCCTCCGATAATACACCGAGATTTGAAGTGTGACAATATCTTTGTCAATGGTCATCTTGGGCAAGTCAAGATTGATGACACCCTTGATGATAGCAGTTCACAATGCTCGTCGACATCGGGAACGTACTCCAACTTCAATTACATCAGCAACGACGAGTACGAAACCAGTTCGATTCGAACAGATCAACATAAGATTCACAACTCCTCGAGATTTTGTCCCATTGAGAACCGGAAAAACAAGGATTTCATGGGTGGAGTTTTGTACAAAACGAGCCAATGTGCGGTCGGGGCGTCTCAAGGAGCAGCGTCTGGTCGGAAGGACAAGAGAGGAGGAACGGATGGGCGTAGATTAACAAGAAACAGGTCACTAGTTGATGTACACAGCCAATTGTTGCATCTTTCGTTGGTCGAGGAAGTGAATAGAAGACGGTTATTCAAGACGGTCGGAGCGGTTGAAAGCATCGGTTTTCAAGCGCCTTGTGAGGTTTCTTCGAGCAGCAAAAGGGTGTCGAGTAGGCAAGCGATCGGGAACCGAAGTAGCAATGTAACGAGAACGAGAAGAAATGGTGATACTAGGCAAGATGTTTGGAAGAGAACATGA 1026 45.71 MFKNSKSEYGYVETDPTSRYGRFEEVLGKGAMKTVYKAIDEFLGIEVAWSRVKLNEVLRSPEDLQRLYSEVHLLSTLKHESIMQFYTSWIDVDHKTFNFITELFTSGTLREYGKRYSQVDIRAIKSWARQILLGLVYLHEHDPPIIHRDLKCDNIFVNGHLGQVKIDDTLDDSSSQCSSTSGTYSNFNYISNDEYETSSIRTDQHKIHNSSRFCPIENRKNKDFMGGVLYKTSQCAVGASQGAASGRKDKRGGTDGRRLTRNRSLVDVHSQLLHLSLVEEVNRRRLFKTVGAVESIGFQAPCEVSSSSKRVSSRQAIGNRSSNVTRTRRNGDTRQDVWKRT 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6540824 6544731 - Cp4.1LG05g10000.1 Cpe05g01001 470206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01001 341 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED 167 328 - -
Cpe05g01001 341 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 168 - -
Cpe05g01001 341 MobiDBLite consensus disorder prediction 327 341 - -
Cpe05g01001 341 SMART serkin_6 21 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g01001 341 ProSiteProfiles Protein kinase domain profile. 21 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g01001 341 Pfam Protein kinase domain 24 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g01001 341 Gene3D Phosphorylase Kinase; domain 1 5 102 - -
Cpe05g01001 341 Gene3D Transferase(Phosphotransferase) domain 1 104 205 - -
Cpe05g01001 341 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 167 328 - -
Cpe05g01001 341 SUPERFAMILY Protein kinase-like (PK-like) 15 168 IPR011009 -
Cpe05g01001 341 MobiDBLite consensus disorder prediction 309 326 - -
Cpe05g01001 341 MobiDBLite consensus disorder prediction 309 341 - -
Cpe05g01001 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Cpe05g01001 341 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED 4 168 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01001 Cpe16g00685 CCT
Cpe05g01001 Cpe16g00685 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01001 Cpe-Chr5:6540824 Cpe09g01001 Cpe-Chr9:8877785 1.91E-77 dispersed
Cpe10g00999 Cpe-Chr10:5691363 Cpe05g01001 Cpe-Chr5:6540824 7.99E-09 wgd
Cpe16g00685 Cpe-Chr16:7098204 Cpe05g01001 Cpe-Chr5:6540824 7.59E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62431 PF00069 Pkinase 2.70E-24 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01001 K08867 - csv:101203757 313.538