Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01021 CAAGAAATCGTGAGGCTGGATCTGATACACCGCCACCATCCGGAAGTGGTTAAGAGGCTTCATGATGAAATTAAGGTGGATAAAATGGAGGATCGCATCAAGGATATTCGCTATCACGATCAATCTCGCCTGCGAGCCATCTCCGCCCACCTGAATTGGACCAAAGTTGTGGAGAATGCGGAGGAGAAGGAGAAGAAGGAGGCGTCGGGTTCGAATCTTCCTCCACAGTCGCAGTCGCCAATAGCATTGAAAACATACCCCGGCGCTGATTACGGTAGCAGTGAGTTTTTCGTGCAATTGAAATTGGGAACGCCGCCGCAGAAGTTCACGATGATTGCAGATACCGGAAGTGACCTATTGTGGACGAGATGCAGATACCGGCGGTGCAGGGGAGATTGCAGCAACCCCTCTCCGATCCATAAAATGCGTAACAGAATGAGAGATAGATTCATTTACGCGCTTTATGCGAATCAATCATCTTCTTTCTCCCCAATTCCTTGTTCCTCCGAGCAGTGTATCCAGGATTTCTCTGAGCTCGGCGGCCAACCCGATTGTCCAACCCCTAACTCCCCTTGTTCCTATACCTACAGCTACTTAAGTGGGGACTGCGCGATGGGAATATTCGCAACTGAGACGGTAACGGTAAGACTAACAAACGGAAAAGAAAAGCAACTGAAGGACATTCTATACGGCTGCACCGAAGAAATAACTGACAGCAAATTCTTGGACGGAGCCGATGGCCTCATTGGCTTAGGCTCTAGCATCTACTCCTTCGTCTACAAAGCCGCCGAAAACAACATCGGCGGCGGCTTCTCCTACTGCCTCGCCGACCACATCCGCAGTATAACCGCCATTAGCTACTTCGTCTTCGGCACCCCCTCCCCTAAGACCTTCGCCGCCTCCACATCCACTCCCATCGGCCCCCCCGCCACCACTAAACTCATCACCGGCGGGCGATACAGCTGCTACTACGGCGTCCAACTGGCCGGAATCTCCGTCGACGGACAGATCCTGAACATCCCCCCTCACGTCTGGAACATCAATTCCGGTTGCGGCACCATCTTGGACACGGGCACCAGCCTGACGATGCTGACGGCGCCGGCTCACGATGCGGTGATAGAAGCGATGGCTCCGAAGATCGAAAAATTCGGAAGAATGGAAAGGGATGTAAAGGGTGAAAGGGAGAAGAACTTCAAACTTTGCTTCAATGACACTGAGTGGAGATTTGGTATGACGCCGAAGCTTGGATTCCATTTCGAAGGCGGGGTGGTGTTCGAACCGCCGGATAGGAGCTACGTCGTTCCGGCGTCAGAACAATGTAGCTGTATTGCCATAACTTCTCTGCCCTTTCCATCAATCAATATCTTAGGGAATATTATTCAGCAAACTTACCTTTGGCAATTTGATTTACACAAGGGATCCGTCACTTTTGCTCCCTCCGACTGCGCCTAG 1452 51.58 QEIVRLDLIHRHHPEVVKRLHDEIKVDKMEDRIKDIRYHDQSRLRAISAHLNWTKVVENAEEKEKKEASGSNLPPQSQSPIALKTYPGADYGSSEFFVQLKLGTPPQKFTMIADTGSDLLWTRCRYRRCRGDCSNPSPIHKMRNRMRDRFIYALYANQSSSFSPIPCSSEQCIQDFSELGGQPDCPTPNSPCSYTYSYLSGDCAMGIFATETVTVRLTNGKEKQLKDILYGCTEEITDSKFLDGADGLIGLGSSIYSFVYKAAENNIGGGFSYCLADHIRSITAISYFVFGTPSPKTFAASTSTPIGPPATTKLITGGRYSCYYGVQLAGISVDGQILNIPPHVWNINSGCGTILDTGTSLTMLTAPAHDAVIEAMAPKIEKFGRMERDVKGEREKNFKLCFNDTEWRFGMTPKLGFHFEGGVVFEPPDRSYVVPASEQCSCIAITSLPFPSINILGNIIQQTYLWQFDLHKGSVTFAPSDCA 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6657366 6658920 + Cp4.1LG05g10090.1 Cpe05g01021 470226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01021 483 Gene3D Acid Proteases 77 291 IPR021109 -
Cpe05g01021 483 Gene3D Acid Proteases 308 483 IPR021109 -
Cpe05g01021 483 ProSiteProfiles Peptidase family A1 domain profile. 96 478 IPR033121 -
Cpe05g01021 483 MobiDBLite consensus disorder prediction 62 84 - -
Cpe05g01021 483 PRINTS Pepsin (A1) aspartic protease family signature 102 122 IPR001461 GO:0004190|GO:0006508
Cpe05g01021 483 PRINTS Pepsin (A1) aspartic protease family signature 353 364 IPR001461 GO:0004190|GO:0006508
Cpe05g01021 483 PRINTS Pepsin (A1) aspartic protease family signature 454 469 IPR001461 GO:0004190|GO:0006508
Cpe05g01021 483 Pfam Xylanase inhibitor C-terminal 324 478 IPR032799 -
Cpe05g01021 483 CDD pepsin_A_like_plant 95 482 IPR034161 -
Cpe05g01021 483 SUPERFAMILY Acid proteases 88 482 IPR021109 -
Cpe05g01021 483 PANTHER ASPARTIC PROTEINASE NANA, CHLOROPLAST 4 482 - -
Cpe05g01021 483 PANTHER OS07G0603500 PROTEIN-RELATED 4 482 - -
Cpe05g01021 483 Pfam Xylanase inhibitor N-terminal 96 291 IPR032861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01021 - - - csv:101204452 494.967
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01021 Cpe16g00700 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01021 Cpe-Chr5:6657366 Cpe13g00033 Cpe-Chr13:270438 1.77E-53 dispersed
Cpe05g01007 Cpe-Chr5:6577056 Cpe05g01021 Cpe-Chr5:6657366 0 transposed
Cpe16g00700 Cpe-Chr16:7204525 Cpe05g01021 Cpe-Chr5:6657366 2.76E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1187 . . . . . . . . . . . . . . . . Cpe16g00700 . . . . . . . Cla02g01844 Cam02g1950 Cec02g1977 Cco02g2016 Clacu02g1931 Cmu02g1880 Cre02g2192 . . . . . . . Cme11g01660 . . . . . . . . Sed01g0777 . . . . . . . Cpe05g01021 Bhi10g00915 Tan05g0569 Cmetu11g0770 . Hepe08g0662 . . . . . . . . . . Csa06g01136 Chy11g01056 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009402 0 1 1 1 1 1 0 1 1 1 1 1 3 1 1 3 1 1 3 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01021 Cpe_Chr05 FPKM 15.350492 15.732413 18.946772 23.45027 19.342211 21.030119 18.054937 23.668915 22.916605 21.653194