Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01023 ATGACTCAATCGCCGGTGCCTCCGTCGTTGGCTCCGCCGCAGCCCTCGGCATTATACGGCTCCGGAGTTCAGGTCCGTTGCGCCGGTTGTCGCGATGTGTTGGTGGTGGCGTCTGGCCACACCGAATTCTTCTGTCCATCTTGTCAATTGCCTCAGATGTTGCCTCCTGAACTCATAGTTAGGGCCTACTCCAAGTCTCTTCCTCTTCCTACTCCGCCTCCTCCGCCGCCGCCACCGTCGCTGGCTCCTCCTCCTCCGCCTCCTCCTCCGTCGATACACCATGTCCCTGCTCATGGCATTGATCCTACCAAGATGCAACTCCCCTGCGCTAATTGTAAGGCGCTTCTTAATGTTCCTCATGGTTTAACTAGGTTCGTTTGTCCTCAGTGCGCGGTTGACCTCGCTGTCGATGTGTCCAAGCTCCATCAGTTCTTTCCCTCCCGGCTGCCTCCTCCCGAGGAAGTCAACGAGGTAGCCATTGAAGTGGAAAGAGAAGAAGATGAAGGTGGTATCGTAGGAGAAACATTTACAGAATATCACCCTCCCAAACTATCTATAGGCCCACCTCACCCAGACCCAGTTGTGGAGACATCCTCCTTATCTGCTGTACAGCCACCTGAACCCACTTATGATTTAAAAATCAAGGACGATTTAGAAAAGTCAAAAACTCTGTCATGCTTGCAAATCGAGACCTTGGTTTATGCTTCTCAGAGGCATATGCACCATCTCCCGAATGATACCAGGGCAGGATTCTTTATTGGAGATGGAGCTGGTGTTGGTAAAGGTCGGACAATTGCAGGTTTATTATGGGAAAATTGGCACCATGGGAGGAGGAAAGCACTGTGGATTTCTGTTGGTTCAGATTTGAAGTATGATGCCAGGAGAGACTTGGACGATGTAGGTGCGGCGTGCATTGAAGTGCATGCTTTGAACAAGCTGCCTTATTCAAAGCTTGACTCAAAGTCTGTGGGTATTAGAGAAGGAGTTGTCTTTTTGACGTATAGCAGCCTCATAGCATCTTCTGAAAGAGGCCGTTCTCGCCTGCAGCAGCTTGTTCAGTGGTGTGGAACAGGATTTGATGGTCTAATTGTATTTGATGAGTGCCATAAAGCAAAAAATTTGGTACCGGAAGCTGGAAGCCAGCCTACTAGGACCGGAGAAGCTGTTCTAGAGCTGCAGGATCGACTTCCTGAAGCCCGAATAATTTACTGCTCAGCCACTGGTGCATCTGAGCCACGCAATATGGGTTATATGGTCCGACTTGGGCTTTGGGGAACTGGGACTTCATTCATTGACTTTCGAGATTTTCTAGGTGCACTGGAGAGAGGGGGTGTTGGGGCTTTAGAACTTGTTGCCATGGACATGAAAGCAAGGGGTATGTATTTGTGTCGCACACTTAGCTACCGAGGAGCTGAATTTGAAATTGTCGAAGCACCATTAGAAGCTGAGATGATGGAAATGTATAAATTAGCAGCTGAATTTTGGGCAAAGTTGCGGGTAGAATTAATGACAGCATGTGCATATGTCACTAGTGACAAGCCTAGCACCAATCAACTTTGGCGATTATTTTGGGCAAGCCATCAGCGTTTCTTCAGGCATTTGTGTATGTCTGCCAAGGTTCCTGCTACTGTTAGACTAGCTAAGCAGGCATTATTGGAAGACAAATGTGTTGTCATTGGCCTGCAAAGTACTGGAGAGGCACGCACCGAGGAAGCTGTGACAAAATATGGCCTTGAGCTTGATGATTTTGTTTCTGGACCTCGAGAACTATTGCTCAAATTTGTGGAGGAAAATTACCCTTTGCCTGAAAAGCCTGAAACCCTCCCTGAGGAGGGAAGTGTCAAGGAGCTTCAAAGGAAGAGACACTCAGCAACTCCTGGCATTTCACTAAATGGGAGGTTAAGGAAAGCTGCAAAATGGAAGCCTCCAAGTGATGTCGAAAGTGATGAAGAATCAGAATCTGATTCTGCTCCTGAATCTACCGAGTCAGATGATGAGTTTCAGATATGCGAGATTTGCAATACTGAAGAGGGAAGGAAAAAATTACTTCAATGCTCCTGTTGTGAGCACCTTTTTCATCCCGCTTGTCTCGACCCTCCTCTGTTGGAAACAGAAACTGCAGAATGGTCATGTCAGTCTTGCAAGGAAAAGACAGATGAGTATCTTAAAGAAAGAAAAGCTGTTATAGCTGAACTTTTAAAAAGGTATGATGCTGCTTCAGATCGTAAGTCTAGTTTGCTCGCAATTATTCGTTCGTTGAATCTTCCAAACAATCCTTTGGATGATATTATTGACCAGCTTGGAGGCCCGGATAAAGTCGCTGAAATAACAGGAAGAAGGGGAATGCTTGTAAGGGCCTCCAATGGAAAGGGTGTCACTTACCAGCCACGGAACTCGAAAGATGTGACTATGGAGATGGTCAATATGCATGAGAAACAACTGTTTATGGATGGTAAGAAGTTTGTTGCTATCATCTCTGAAGCTGGATCAGCTGGGGTTTCATTGCAGGCTGACAGAAGAGCTGCAAATCAGAAAAGAAGAGTTCATTTTACTTTAGAACTCCCTTGGAGTGCCGATCGAGCCATTCAACAATTTGGACGAACTCATCGCTCTAATCAAGCTTCAGCACCCGAATACAGGCTGCTTTTTACGAATCTTGGTGGAGAACGCAGGGCTGGACTGTCGCTAAGTGCTTATAACTATGACAGCGCTTATGGGAAGATGGCCTTGACGGTGATGTATAGAGGAATAATGGAGCAGGATGTCTTGCCTGTCGAACCACCGGGGTGCTCATCTGGGAAACCTGATTCAATCCGCGATTTTATTGAGAATGCAAAAGCTGCTCTTAATTCTGTGGGAATAATTAGGGACGCCGTACTTGCGACTGGGAAGGACTCTGGAAAGACCTCTGGTCGTATTGTTGAGTCAGATATGAATGATATTGGACGTTTTCTTAATCGGCTTTTGGGCCTGCCTCCTGAGATTCAAAATAGGATTTTTGAGTTATTTGTCAGCATATTGGATCTCTTAGTTCAGAAAGCACGCGTTGAAGGGAACCTTGATTCTGGAATTGTTGATATGAGAGCCAATGTTATTGAATTACGAGGAAGTCCAAAGACTGTTCATGTTGATCCCGTCTCTGGGGCATCAACTATGCTTTTTACTTTCACTTTGGACCGTGGTATAACCTGGGAGTCTGCGAGCACCATTCTTGATGAGAAGCAAAAGGATGGGATTGGTTCAACCAATGATGGGTTCTATGAATCTAAGAGGGATTGGTTGGGAAGACGCCACTTCATATTAGCATTTGAAAGTTCAATCCCTGGAATGTATAAAATTGTCCGTCCAGCTATTGGGGAGTCGCTAAGGGAAATGTCTCTCTCTGAGTTACGAAGCAAATATCGCAAGACACCATCTTTAGAGAAGGCTCGTAGTGGGTGGGAAGATGAGTATGACATTTCCTCGAAACAGTGCATGCATGGACCGAATTGTAAGCTTGGAAACTTTTGTACGGTTGGCAGGAGAATACAAGAAGTTAATGTTTTGGGTGGCCTTATTCTTCCCGTTTGGGGAACTATTGAAAAAGCCCTTTCTAAACAGGCACGTCAAAGTCACAAACGCCTTCACGTTGTACGTATAGAAACTACCACAGATAATCAGAGAATCGTTGGGCTATTTGTTCCAAACGCAGCGGTTGAATCAGTACTTCAAGGTTTGGCATGGGTACAAGATATAGATGATTGA 3744 45.97 MTQSPVPPSLAPPQPSALYGSGVQVRCAGCRDVLVVASGHTEFFCPSCQLPQMLPPELIVRAYSKSLPLPTPPPPPPPPSLAPPPPPPPPSIHHVPAHGIDPTKMQLPCANCKALLNVPHGLTRFVCPQCAVDLAVDVSKLHQFFPSRLPPPEEVNEVAIEVEREEDEGGIVGETFTEYHPPKLSIGPPHPDPVVETSSLSAVQPPEPTYDLKIKDDLEKSKTLSCLQIETLVYASQRHMHHLPNDTRAGFFIGDGAGVGKGRTIAGLLWENWHHGRRKALWISVGSDLKYDARRDLDDVGAACIEVHALNKLPYSKLDSKSVGIREGVVFLTYSSLIASSERGRSRLQQLVQWCGTGFDGLIVFDECHKAKNLVPEAGSQPTRTGEAVLELQDRLPEARIIYCSATGASEPRNMGYMVRLGLWGTGTSFIDFRDFLGALERGGVGALELVAMDMKARGMYLCRTLSYRGAEFEIVEAPLEAEMMEMYKLAAEFWAKLRVELMTACAYVTSDKPSTNQLWRLFWASHQRFFRHLCMSAKVPATVRLAKQALLEDKCVVIGLQSTGEARTEEAVTKYGLELDDFVSGPRELLLKFVEENYPLPEKPETLPEEGSVKELQRKRHSATPGISLNGRLRKAAKWKPPSDVESDEESESDSAPESTESDDEFQICEICNTEEGRKKLLQCSCCEHLFHPACLDPPLLETETAEWSCQSCKEKTDEYLKERKAVIAELLKRYDAASDRKSSLLAIIRSLNLPNNPLDDIIDQLGGPDKVAEITGRRGMLVRASNGKGVTYQPRNSKDVTMEMVNMHEKQLFMDGKKFVAIISEAGSAGVSLQADRRAANQKRRVHFTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTNLGGERRAGLSLSAYNYDSAYGKMALTVMYRGIMEQDVLPVEPPGCSSGKPDSIRDFIENAKAALNSVGIIRDAVLATGKDSGKTSGRIVESDMNDIGRFLNRLLGLPPEIQNRIFELFVSILDLLVQKARVEGNLDSGIVDMRANVIELRGSPKTVHVDPVSGASTMLFTFTLDRGITWESASTILDEKQKDGIGSTNDGFYESKRDWLGRRHFILAFESSIPGMYKIVRPAIGESLREMSLSELRSKYRKTPSLEKARSGWEDEYDISSKQCMHGPNCKLGNFCTVGRRIQEVNVLGGLILPVWGTIEKALSKQARQSHKRLHVVRIETTTDNQRIVGLFVPNAAVESVLQGLAWVQDIDD 1247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6673778 6708971 - Cp4.1LG05g10330.1 Cpe05g01023 470228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01023 1247 PANTHER OS08G0223700 PROTEIN 22 1247 - -
Cpe05g01023 1247 Pfam P-loop containing NTP hydrolase pore-1 189 489 IPR039187 -
Cpe05g01023 1247 MobiDBLite consensus disorder prediction 602 622 - -
Cpe05g01023 1247 ProSiteProfiles Zinc finger PHD-type profile. 667 717 IPR019787 -
Cpe05g01023 1247 Gene3D - 216 419 IPR027417 -
Cpe05g01023 1247 ProSiteProfiles Zinc finger RING-type profile. 670 715 IPR001841 -
Cpe05g01023 1247 Pfam C-terminal domain on Strawberry notch homologue 893 1026 IPR026937 -
Cpe05g01023 1247 Pfam C-terminal domain on Strawberry notch homologue 758 891 IPR026937 -
Cpe05g01023 1247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 616 728 IPR013083 -
Cpe05g01023 1247 MobiDBLite consensus disorder prediction 602 663 - -
Cpe05g01023 1247 ProSitePatterns Zinc finger PHD-type signature. 670 714 IPR019786 -
Cpe05g01023 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 432 IPR027417 -
Cpe05g01023 1247 SMART PHD_3 669 715 IPR001965 -
Cpe05g01023 1247 MobiDBLite consensus disorder prediction 69 99 - -
Cpe05g01023 1247 Pfam PHD-finger 669 717 IPR019787 -
Cpe05g01023 1247 MobiDBLite consensus disorder prediction 69 95 - -
Cpe05g01023 1247 MobiDBLite consensus disorder prediction 648 663 - -
Cpe05g01023 1247 PANTHER STRAWBERRY NOTCH-RELATED 22 1247 IPR026741 GO:0006355
Cpe05g01023 1247 SUPERFAMILY FYVE/PHD zinc finger 659 720 IPR011011 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49560 PF13872 AAA_34 5.90E-133 CL0023 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01023 - - cmos:111451223 2354.71