Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01023 ATGACTCAATCGCCGGTGCCTCCGTCGTTGGCTCCGCCGCAGCCCTCGGCATTATACGGCTCCGGAGTTCAGGTCCGTTGCGCCGGTTGTCGCGATGTGTTGGTGGTGGCGTCTGGCCACACCGAATTCTTCTGTCCATCTTGTCAATTGCCTCAGATGTTGCCTCCTGAACTCATAGTTAGGGCCTACTCCAAGTCTCTTCCTCTTCCTACTCCGCCTCCTCCGCCGCCGCCACCGTCGCTGGCTCCTCCTCCTCCGCCTCCTCCTCCGTCGATACACCATGTCCCTGCTCATGGCATTGATCCTACCAAGATGCAACTCCCCTGCGCTAATTGTAAGGCGCTTCTTAATGTTCCTCATGGTTTAACTAGGTTCGTTTGTCCTCAGTGCGCGGTTGACCTCGCTGTCGATGTGTCCAAGCTCCATCAGTTCTTTCCCTCCCGGCTGCCTCCTCCCGAGGAAGTCAACGAGGTAGCCATTGAAGTGGAAAGAGAAGAAGATGAAGGTGGTATCGTAGGAGAAACATTTACAGAATATCACCCTCCCAAACTATCTATAGGCCCACCTCACCCAGACCCAGTTGTGGAGACATCCTCCTTATCTGCTGTACAGCCACCTGAACCCACTTATGATTTAAAAATCAAGGACGATTTAGAAAAGTCAAAAACTCTGTCATGCTTGCAAATCGAGACCTTGGTTTATGCTTCTCAGAGGCATATGCACCATCTCCCGAATGATACCAGGGCAGGATTCTTTATTGGAGATGGAGCTGGTGTTGGTAAAGGTCGGACAATTGCAGGTTTATTATGGGAAAATTGGCACCATGGGAGGAGGAAAGCACTGTGGATTTCTGTTGGTTCAGATTTGAAGTATGATGCCAGGAGAGACTTGGACGATGTAGGTGCGGCGTGCATTGAAGTGCATGCTTTGAACAAGCTGCCTTATTCAAAGCTTGACTCAAAGTCTGTGGGTATTAGAGAAGGAGTTGTCTTTTTGACGTATAGCAGCCTCATAGCATCTTCTGAAAGAGGCCGTTCTCGCCTGCAGCAGCTTGTTCAGTGGTGTGGAACAGGATTTGATGGTCTAATTGTATTTGATGAGTGCCATAAAGCAAAAAATTTGGTACCGGAAGCTGGAAGCCAGCCTACTAGGACCGGAGAAGCTGTTCTAGAGCTGCAGGATCGACTTCCTGAAGCCCGAATAATTTACTGCTCAGCCACTGGTGCATCTGAGCCACGCAATATGGGTTATATGGTCCGACTTGGGCTTTGGGGAACTGGGACTTCATTCATTGACTTTCGAGATTTTCTAGGTGCACTGGAGAGAGGGGGTGTTGGGGCTTTAGAACTTGTTGCCATGGACATGAAAGCAAGGGGTATGTATTTGTGTCGCACACTTAGCTACCGAGGAGCTGAATTTGAAATTGTCGAAGCACCATTAGAAGCTGAGATGATGGAAATGTATAAATTAGCAGCTGAATTTTGGGCAAAGTTGCGGGTAGAATTAATGACAGCATGTGCATATGTCACTAGTGACAAGCCTAGCACCAATCAACTTTGGCGATTATTTTGGGCAAGCCATCAGCGTTTCTTCAGGCATTTGTGTATGTCTGCCAAGGTTCCTGCTACTGTTAGACTAGCTAAGCAGGCATTATTGGAAGACAAATGTGTTGTCATTGGCCTGCAAAGTACTGGAGAGGCACGCACCGAGGAAGCTGTGACAAAATATGGCCTTGAGCTTGATGATTTTGTTTCTGGACCTCGAGAACTATTGCTCAAATTTGTGGAGGAAAATTACCCTTTGCCTGAAAAGCCTGAAACCCTCCCTGAGGAGGGAAGTGTCAAGGAGCTTCAAAGGAAGAGACACTCAGCAACTCCTGGCATTTCACTAAATGGGAGGTTAAGGAAAGCTGCAAAATGGAAGCCTCCAAGTGATGTCGAAAGTGATGAAGAATCAGAATCTGATTCTGCTCCTGAATCTACCGAGTCAGATGATGAGTTTCAGATATGCGAGATTTGCAATACTGAAGAGGGAAGGAAAAAATTACTTCAATGCTCCTGTTGTGAGCACCTTTTTCATCCCGCTTGTCTCGACCCTCCTCTGTTGGAAACAGAAACTGCAGAATGGTCATGTCAGTCTTGCAAGGAAAAGACAGATGAGTATCTTAAAGAAAGAAAAGCTGTTATAGCTGAACTTTTAAAAAGGTATGATGCTGCTTCAGATCGTAAGTCTAGTTTGCTCGCAATTATTCGTTCGTTGAATCTTCCAAACAATCCTTTGGATGATATTATTGACCAGCTTGGAGGCCCGGATAAAGTCGCTGAAATAACAGGAAGAAGGGGAATGCTTGTAAGGGCCTCCAATGGAAAGGGTGTCACTTACCAGCCACGGAACTCGAAAGATGTGACTATGGAGATGGTCAATATGCATGAGAAACAACTGTTTATGGATGGTAAGAAGTTTGTTGCTATCATCTCTGAAGCTGGATCAGCTGGGGTTTCATTGCAGGCTGACAGAAGAGCTGCAAATCAGAAAAGAAGAGTTCATTTTACTTTAGAACTCCCTTGGAGTGCCGATCGAGCCATTCAACAATTTGGACGAACTCATCGCTCTAATCAAGCTTCAGCACCCGAATACAGGCTGCTTTTTACGAATCTTGGTGGAGAACGCAGGGCTGGACTGTCGCTAAGTGCTTATAACTATGACAGCGCTTATGGGAAGATGGCCTTGACGGTGATGTATAGAGGAATAATGGAGCAGGATGTCTTGCCTGTCGAACCACCGGGGTGCTCATCTGGGAAACCTGATTCAATCCGCGATTTTATTGAGAATGCAAAAGCTGCTCTTAATTCTGTGGGAATAATTAGGGACGCCGTACTTGCGACTGGGAAGGACTCTGGAAAGACCTCTGGTCGTATTGTTGAGTCAGATATGAATGATATTGGACGTTTTCTTAATCGGCTTTTGGGCCTGCCTCCTGAGATTCAAAATAGGATTTTTGAGTTATTTGTCAGCATATTGGATCTCTTAGTTCAGAAAGCACGCGTTGAAGGGAACCTTGATTCTGGAATTGTTGATATGAGAGCCAATGTTATTGAATTACGAGGAAGTCCAAAGACTGTTCATGTTGATCCCGTCTCTGGGGCATCAACTATGCTTTTTACTTTCACTTTGGACCGTGGTATAACCTGGGAGTCTGCGAGCACCATTCTTGATGAGAAGCAAAAGGATGGGATTGGTTCAACCAATGATGGGTTCTATGAATCTAAGAGGGATTGGTTGGGAAGACGCCACTTCATATTAGCATTTGAAAGTTCAATCCCTGGAATGTATAAAATTGTCCGTCCAGCTATTGGGGAGTCGCTAAGGGAAATGTCTCTCTCTGAGTTACGAAGCAAATATCGCAAGACACCATCTTTAGAGAAGGCTCGTAGTGGGTGGGAAGATGAGTATGACATTTCCTCGAAACAGTGCATGCATGGACCGAATTGTAAGCTTGGAAACTTTTGTACGGTTGGCAGGAGAATACAAGAAGTTAATGTTTTGGGTGGCCTTATTCTTCCCGTTTGGGGAACTATTGAAAAAGCCCTTTCTAAACAGGCACGTCAAAGTCACAAACGCCTTCACGTTGTACGTATAGAAACTACCACAGATAATCAGAGAATCGTTGGGCTATTTGTTCCAAACGCAGCGGTTGAATCAGTACTTCAAGGTTTGGCATGGGTACAAGATATAGATGATTGA 3744 45.97 MTQSPVPPSLAPPQPSALYGSGVQVRCAGCRDVLVVASGHTEFFCPSCQLPQMLPPELIVRAYSKSLPLPTPPPPPPPPSLAPPPPPPPPSIHHVPAHGIDPTKMQLPCANCKALLNVPHGLTRFVCPQCAVDLAVDVSKLHQFFPSRLPPPEEVNEVAIEVEREEDEGGIVGETFTEYHPPKLSIGPPHPDPVVETSSLSAVQPPEPTYDLKIKDDLEKSKTLSCLQIETLVYASQRHMHHLPNDTRAGFFIGDGAGVGKGRTIAGLLWENWHHGRRKALWISVGSDLKYDARRDLDDVGAACIEVHALNKLPYSKLDSKSVGIREGVVFLTYSSLIASSERGRSRLQQLVQWCGTGFDGLIVFDECHKAKNLVPEAGSQPTRTGEAVLELQDRLPEARIIYCSATGASEPRNMGYMVRLGLWGTGTSFIDFRDFLGALERGGVGALELVAMDMKARGMYLCRTLSYRGAEFEIVEAPLEAEMMEMYKLAAEFWAKLRVELMTACAYVTSDKPSTNQLWRLFWASHQRFFRHLCMSAKVPATVRLAKQALLEDKCVVIGLQSTGEARTEEAVTKYGLELDDFVSGPRELLLKFVEENYPLPEKPETLPEEGSVKELQRKRHSATPGISLNGRLRKAAKWKPPSDVESDEESESDSAPESTESDDEFQICEICNTEEGRKKLLQCSCCEHLFHPACLDPPLLETETAEWSCQSCKEKTDEYLKERKAVIAELLKRYDAASDRKSSLLAIIRSLNLPNNPLDDIIDQLGGPDKVAEITGRRGMLVRASNGKGVTYQPRNSKDVTMEMVNMHEKQLFMDGKKFVAIISEAGSAGVSLQADRRAANQKRRVHFTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTNLGGERRAGLSLSAYNYDSAYGKMALTVMYRGIMEQDVLPVEPPGCSSGKPDSIRDFIENAKAALNSVGIIRDAVLATGKDSGKTSGRIVESDMNDIGRFLNRLLGLPPEIQNRIFELFVSILDLLVQKARVEGNLDSGIVDMRANVIELRGSPKTVHVDPVSGASTMLFTFTLDRGITWESASTILDEKQKDGIGSTNDGFYESKRDWLGRRHFILAFESSIPGMYKIVRPAIGESLREMSLSELRSKYRKTPSLEKARSGWEDEYDISSKQCMHGPNCKLGNFCTVGRRIQEVNVLGGLILPVWGTIEKALSKQARQSHKRLHVVRIETTTDNQRIVGLFVPNAAVESVLQGLAWVQDIDD 1247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6673778 6708971 - Cp4.1LG05g10330.1 Cpe05g01023 470228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01023 1247 PANTHER OS08G0223700 PROTEIN 22 1247 - -
Cpe05g01023 1247 Pfam P-loop containing NTP hydrolase pore-1 189 489 IPR039187 -
Cpe05g01023 1247 MobiDBLite consensus disorder prediction 602 622 - -
Cpe05g01023 1247 ProSiteProfiles Zinc finger PHD-type profile. 667 717 IPR019787 -
Cpe05g01023 1247 Gene3D - 216 419 IPR027417 -
Cpe05g01023 1247 ProSiteProfiles Zinc finger RING-type profile. 670 715 IPR001841 -
Cpe05g01023 1247 Pfam C-terminal domain on Strawberry notch homologue 893 1026 IPR026937 -
Cpe05g01023 1247 Pfam C-terminal domain on Strawberry notch homologue 758 891 IPR026937 -
Cpe05g01023 1247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 616 728 IPR013083 -
Cpe05g01023 1247 MobiDBLite consensus disorder prediction 602 663 - -
Cpe05g01023 1247 ProSitePatterns Zinc finger PHD-type signature. 670 714 IPR019786 -
Cpe05g01023 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 432 IPR027417 -
Cpe05g01023 1247 SMART PHD_3 669 715 IPR001965 -
Cpe05g01023 1247 MobiDBLite consensus disorder prediction 69 99 - -
Cpe05g01023 1247 Pfam PHD-finger 669 717 IPR019787 -
Cpe05g01023 1247 MobiDBLite consensus disorder prediction 69 95 - -
Cpe05g01023 1247 MobiDBLite consensus disorder prediction 648 663 - -
Cpe05g01023 1247 PANTHER STRAWBERRY NOTCH-RELATED 22 1247 IPR026741 GO:0006355
Cpe05g01023 1247 SUPERFAMILY FYVE/PHD zinc finger 659 720 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01023 - - - cmos:111451223 2354.71
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1181 . . . . Bpe07g00481 . . . . . . . . . . . . . . . . . . . Cla02g01841 Cam02g1947 Cec02g1974 Cco02g2013 Clacu02g1928 Cmu02g1877 Cre02g2189 . . . . . . . Cme11g01655 . . . . . . . Bma12g00561 . . . . . . . . Cpe05g01023 Bhi10g00921 . . . . . . . . . . . . . . Csa06g01139 Chy11g01053 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008454 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49560 PF13872 AAA_34 5.90E-133 CL0023 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01023 Cpe_Chr05 FPKM 2.304304 2.247283 4.695223 4.027145 14.933282 14.406242 16.413805 9.813313 8.728091 8.544604