Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01024 ATGCCGCTAACAGCATGGTTCAGCAATATGGGCAGTTTGGTCAGCTCCTCTTCCAAACGGAGCGGTGGCGGAGAAAAGCCTGCCAAAGCGGCTTCAGAACCGTCGTTCGGCGGCCGCGGCGGCGGTGGTGGTGGCGAGAAGCCTGGCAAGACGGCTGTTGAACCGTCGGTTAAGAGTACTGTCAGAAGAAGCATCGGCGAAAATCCTGGCAAAATGGCTGCAGAACCGTCGGTTAAAAATATGGGCGGCGGCGGCGGTGGCGGTGGCCGTGGAAAGGGCTCGAGGTTGTCGGAGAAGAAGGCTTCTTTCCGGCAGAAATATGGTTTCATAGCAGATAATTTCTCTTCCATTGACCAGGTTACAGAAGCCTTGAGAAAAGAAGGATTAGAATCGTCAAACCTCATAGTCGGAATTGATTTCACCAAAAGCAACGAGTGGACAGGTAAAGTCTCGTTCAATAATCGGAGCCTACACTCGGTCTCTGATTCTCCTAATCCCTATGAGAAGGCTCTATCGATCATCGGGAGAACTCTGGCTCCTTTCGACGACGACGGCCTGATTCCTTGCTTCGGTTTCGGCGACGCGACGACACACGATCAAGAGGTGTTCAGTTTTCACAACGACAATTCCCCGTGCCATGGATTTGAAGAAGTTCTGGACTGCTACAAAAGGATAATTCCGAACGTGCAACTTTCAGGGCCAACATCTTACGCCTCCGTGGTTGAAGCAGCAATGAACATTGTGGAGAAGAGCAATGGCCAATTTCACATTCTTCTCATCGTTGCAGATGGACAGGTTACTCGAGGCTCGAGTGTTGGCGATGGAGAGTTGAGTGTTCAAGAGGAGAAAACAATCAAAGCAATTGTAGATGCAAGTGCATATCCTCTTTCGATTATTCTTGTTGGAGTCGGAGACGGGCCTTGGGATGACATGAAGAAGTTCGACGACAAGATTCCAGCACGAGATTTTGATAATTTTCAGTTCGTTAACTTCACCGAGATCATGTCCCGAAACATTGCGACCCCTGAAAAAGAAGCAGCTTTTGCTCTAGCTGCACTGATGGAGGTTCCTTTACAATATAAAGCCGTCAAAGAAATGAATCTTCTAGGACACGTGACAGGAAAAGCGAAATTAGTTCGTCCACGACCCCCACCGACACGTTATACTCGTCCTGCACAACTTACTCCCAAACCCAGTAACACCGTCTCAGCTTCTGCATCAGATGACCGGAGCCAGGTCTGCCCCATTTGCTTGACCGAGGGAAAGGATTTGGCCTTTGGATGCGGCCACATGACCTGTAGAGACTGTGGATCAAGATTATCCAATTGTCATATATGTCGCCAGCCTATCAGAAATCGCATAAGGCTCTACACCGGGTGA 1380 49.49 MPLTAWFSNMGSLVSSSSKRSGGGEKPAKAASEPSFGGRGGGGGGEKPGKTAVEPSVKSTVRRSIGENPGKMAAEPSVKNMGGGGGGGGRGKGSRLSEKKASFRQKYGFIADNFSSIDQVTEALRKEGLESSNLIVGIDFTKSNEWTGKVSFNNRSLHSVSDSPNPYEKALSIIGRTLAPFDDDGLIPCFGFGDATTHDQEVFSFHNDNSPCHGFEEVLDCYKRIIPNVQLSGPTSYASVVEAAMNIVEKSNGQFHILLIVADGQVTRGSSVGDGELSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDMKKFDDKIPARDFDNFQFVNFTEIMSRNIATPEKEAAFALAALMEVPLQYKAVKEMNLLGHVTGKAKLVRPRPPPTRYTRPAQLTPKPSNTVSASASDDRSQVCPICLTEGKDLAFGCGHMTCRDCGSRLSNCHICRQPIRNRIRLYTG 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6709489 6715944 + Cp4.1LG05g10260.1 Cpe05g01024 470229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01024 459 ProSiteProfiles Zinc finger RING-type profile. 414 447 IPR001841 -
Cpe05g01024 459 Pfam Copine 156 370 IPR010734 -
Cpe05g01024 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 458 IPR013083 -
Cpe05g01024 459 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 93 458 - -
Cpe05g01024 459 SUPERFAMILY RING/U-box 410 452 - -
Cpe05g01024 459 CDD RING-HC_RGLG_plant 413 457 IPR045317 GO:0061630|GO:0070534
Cpe05g01024 459 Pfam Zinc finger, C3HC4 type (RING finger) 412 451 - -
Cpe05g01024 459 MobiDBLite consensus disorder prediction 379 406 - -
Cpe05g01024 459 MobiDBLite consensus disorder prediction 8 22 - -
Cpe05g01024 459 SMART VWA_4 131 334 IPR002035 -
Cpe05g01024 459 PANTHER COPINE FAMILY PROTEIN 1 93 458 - -
Cpe05g01024 459 SUPERFAMILY vWA-like 133 314 IPR036465 -
Cpe05g01024 459 MobiDBLite consensus disorder prediction 392 406 - -
Cpe05g01024 459 MobiDBLite consensus disorder prediction 1 98 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01024 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101218058 650.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01024 Cpe-Chr5:6709489 Cpe09g00555 Cpe-Chr9:3825149 5.24E-134 dispersed
Cpe05g01024 Cpe-Chr5:6709489 Cpe13g00875 Cpe-Chr13:7576077 3.74E-145 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1179 . . . . Bpe07g00480 . . . . . . . . . . . . . . . . . . . Cla02g01840 Cam02g1946 Cec02g1973 Cco02g2012 . . Cre02g2188 . . . . . . . Cme11g01654 . . . . . . . . Sed05g3319 . . . . . . . Cpe05g01024 Bhi10g00922 Tan05g0573 Cmetu11g1928 . Hepe08g0658 . . . . . . . . . . Csa06g01141 Chy11g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002870 1 4 2 0 1 1 1 2 2 2 1 1 3 2 2 3 1 3 3 2 2 2 1 2 2 2 2 2 2 1 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01024 Cpe_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.97291 0.0 0.0