Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01024 ATGCCGCTAACAGCATGGTTCAGCAATATGGGCAGTTTGGTCAGCTCCTCTTCCAAACGGAGCGGTGGCGGAGAAAAGCCTGCCAAAGCGGCTTCAGAACCGTCGTTCGGCGGCCGCGGCGGCGGTGGTGGTGGCGAGAAGCCTGGCAAGACGGCTGTTGAACCGTCGGTTAAGAGTACTGTCAGAAGAAGCATCGGCGAAAATCCTGGCAAAATGGCTGCAGAACCGTCGGTTAAAAATATGGGCGGCGGCGGCGGTGGCGGTGGCCGTGGAAAGGGCTCGAGGTTGTCGGAGAAGAAGGCTTCTTTCCGGCAGAAATATGGTTTCATAGCAGATAATTTCTCTTCCATTGACCAGGTTACAGAAGCCTTGAGAAAAGAAGGATTAGAATCGTCAAACCTCATAGTCGGAATTGATTTCACCAAAAGCAACGAGTGGACAGGTAAAGTCTCGTTCAATAATCGGAGCCTACACTCGGTCTCTGATTCTCCTAATCCCTATGAGAAGGCTCTATCGATCATCGGGAGAACTCTGGCTCCTTTCGACGACGACGGCCTGATTCCTTGCTTCGGTTTCGGCGACGCGACGACACACGATCAAGAGGTGTTCAGTTTTCACAACGACAATTCCCCGTGCCATGGATTTGAAGAAGTTCTGGACTGCTACAAAAGGATAATTCCGAACGTGCAACTTTCAGGGCCAACATCTTACGCCTCCGTGGTTGAAGCAGCAATGAACATTGTGGAGAAGAGCAATGGCCAATTTCACATTCTTCTCATCGTTGCAGATGGACAGGTTACTCGAGGCTCGAGTGTTGGCGATGGAGAGTTGAGTGTTCAAGAGGAGAAAACAATCAAAGCAATTGTAGATGCAAGTGCATATCCTCTTTCGATTATTCTTGTTGGAGTCGGAGACGGGCCTTGGGATGACATGAAGAAGTTCGACGACAAGATTCCAGCACGAGATTTTGATAATTTTCAGTTCGTTAACTTCACCGAGATCATGTCCCGAAACATTGCGACCCCTGAAAAAGAAGCAGCTTTTGCTCTAGCTGCACTGATGGAGGTTCCTTTACAATATAAAGCCGTCAAAGAAATGAATCTTCTAGGACACGTGACAGGAAAAGCGAAATTAGTTCGTCCACGACCCCCACCGACACGTTATACTCGTCCTGCACAACTTACTCCCAAACCCAGTAACACCGTCTCAGCTTCTGCATCAGATGACCGGAGCCAGGTCTGCCCCATTTGCTTGACCGAGGGAAAGGATTTGGCCTTTGGATGCGGCCACATGACCTGTAGAGACTGTGGATCAAGATTATCCAATTGTCATATATGTCGCCAGCCTATCAGAAATCGCATAAGGCTCTACACCGGGTGA 1380 49.49 MPLTAWFSNMGSLVSSSSKRSGGGEKPAKAASEPSFGGRGGGGGGEKPGKTAVEPSVKSTVRRSIGENPGKMAAEPSVKNMGGGGGGGGRGKGSRLSEKKASFRQKYGFIADNFSSIDQVTEALRKEGLESSNLIVGIDFTKSNEWTGKVSFNNRSLHSVSDSPNPYEKALSIIGRTLAPFDDDGLIPCFGFGDATTHDQEVFSFHNDNSPCHGFEEVLDCYKRIIPNVQLSGPTSYASVVEAAMNIVEKSNGQFHILLIVADGQVTRGSSVGDGELSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDMKKFDDKIPARDFDNFQFVNFTEIMSRNIATPEKEAAFALAALMEVPLQYKAVKEMNLLGHVTGKAKLVRPRPPPTRYTRPAQLTPKPSNTVSASASDDRSQVCPICLTEGKDLAFGCGHMTCRDCGSRLSNCHICRQPIRNRIRLYTG 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6709489 6715944 + Cp4.1LG05g10260.1 Cpe05g01024 470229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01024 459 ProSiteProfiles Zinc finger RING-type profile. 414 447 IPR001841 -
Cpe05g01024 459 Pfam Copine 156 370 IPR010734 -
Cpe05g01024 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 458 IPR013083 -
Cpe05g01024 459 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 93 458 - -
Cpe05g01024 459 SUPERFAMILY RING/U-box 410 452 - -
Cpe05g01024 459 CDD RING-HC_RGLG_plant 413 457 IPR045317 GO:0061630|GO:0070534
Cpe05g01024 459 Pfam Zinc finger, C3HC4 type (RING finger) 412 451 - -
Cpe05g01024 459 MobiDBLite consensus disorder prediction 379 406 - -
Cpe05g01024 459 MobiDBLite consensus disorder prediction 8 22 - -
Cpe05g01024 459 SMART VWA_4 131 334 IPR002035 -
Cpe05g01024 459 PANTHER COPINE FAMILY PROTEIN 1 93 458 - -
Cpe05g01024 459 SUPERFAMILY vWA-like 133 314 IPR036465 -
Cpe05g01024 459 MobiDBLite consensus disorder prediction 392 406 - -
Cpe05g01024 459 MobiDBLite consensus disorder prediction 1 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01024 Cpe-Chr5:6709489 Cpe09g00555 Cpe-Chr9:3825149 5.24E-134 dispersed
Cpe05g01024 Cpe-Chr5:6709489 Cpe13g00875 Cpe-Chr13:7576077 3.74E-145 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01024 K16280 - csv:101218058 650.973