Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01027 ATGGCTCCCATGACCCTTCCTCCTGGTTTTCGCTTCCATCCTACTGATGAAGAGCTTGTTGCTTACTATTTGGATAGGAAGATCAATGGCCGCTCCATCGAGCTCGAGATCATCCCCGAGATCGATCTTTACAAGTGCGAACCCTGGGAATTACCTGATAAGTCGTTTTTGCCGAGCAAAGATATGGAGTGGTACTTCTATAGCCCTCGAGATCGAAAGTACCCAAATGGATCGAGAACGAATCGTGCAACGAGAGGTGGGTATTGGAAAGCCACGGGAAAAGATAGAACGGTTCAATCGCAAAAACGAGCAATTGGGATGAAGAAGACATTGGTGTATTATAAAGGAAGAGCTCCTCATGGGATCAGAACCAATTGGGTTATGCATGAGTATCGTCTTCTCGATTCTCAACTCGCCAATGCAACATCGTCTCCTTCAACTAAGGATTCTTATGCACTGTGCCGTGTATTCAAGAAGACAACACTAGTACCGAAAGCTATCGGAGAAAAGGAAATCGAGGGCAATGCCGAAGCCCCAACATGGCAGACGGCGGACGAGCACGATATGCAAGTTGACGATAGCGGGGGACCGGAAAGCTCGAGAGGCGGGATGGAAAGCAATGAAGATGTTGATAGTTTTGGTCACTTCCTTCATGAATATAACCCTAAAATCTTCAGCTCTGAAAACTCTTCCTCCGATCTCACACAAGGGAATGTCGCCGACGACTTGCCGGCTCCGGTGGCCTCCGACAATGAAGCCAATAGTGCAGCTAATAATCTCTATCCAATTTACATTGATTGCCCTTCAAATTTTATGCAGATTCCGAGTAAGTTTATGGATCACGAGAATCTCCATTACCAGCATCCTTACTACCCGCCATTGGAGCTCGAGGACTTCCCGCAGCTGAACATAATGGGGGAGACGAAGACGTTAATGAAGCCCGAGTGCATTGATGAGTACATGAAGTTCGACAAGTTCCGAGACTCGATGAATGGAACTCTAGAGGAGATTTTGTCTCTATGTAGTCTTCCCATGCAAGAAGATAATGTCCAAAACTCTTCCTTATTACAGTGA 1074 46.37 MAPMTLPPGFRFHPTDEELVAYYLDRKINGRSIELEIIPEIDLYKCEPWELPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRGGYWKATGKDRTVQSQKRAIGMKKTLVYYKGRAPHGIRTNWVMHEYRLLDSQLANATSSPSTKDSYALCRVFKKTTLVPKAIGEKEIEGNAEAPTWQTADEHDMQVDDSGGPESSRGGMESNEDVDSFGHFLHEYNPKIFSSENSSSDLTQGNVADDLPAPVASDNEANSAANNLYPIYIDCPSNFMQIPSKFMDHENLHYQHPYYPPLELEDFPQLNIMGETKTLMKPECIDEYMKFDKFRDSMNGTLEEILSLCSLPMQEDNVQNSSLLQ 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6733243 6735820 + Cp4.1LG05g10240.1 Cpe05g01027 470232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01027 357 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Cpe05g01027 357 Gene3D NAC domain 15 162 IPR036093 GO:0003677|GO:0006355
Cpe05g01027 357 MobiDBLite consensus disorder prediction 170 210 - -
Cpe05g01027 357 MobiDBLite consensus disorder prediction 227 247 - -
Cpe05g01027 357 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Cpe05g01027 357 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 190 - -
Cpe05g01027 357 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Cpe05g01027 357 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 190 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01027 Cpe16g00702 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01969 Cpe-Chr1:16853122 Cpe05g01027 Cpe-Chr5:6733243 7.21E-91 dispersed
Cpe05g01027 Cpe-Chr5:6733243 Cpe13g00534 Cpe-Chr13:5434330 3.55E-92 dispersed
Cpe16g00702 Cpe-Chr16:7220040 Cpe05g01027 Cpe-Chr5:6733243 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49561 PF02365 NAM 1.30E-39 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01027 - - cmo:103496277 642.884