Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01028 ATGTTTCATGCCACCAAGAAACCCTCCTCTATGACATCTTCCCATGACAGGCCAATGTGTGTCCAAGGAGATTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGTCTCCGCTGGACAGTCGAGCTCCACGAGCGCTTCGTCGACGCTGTCACTCAGCTCGGAGGACCCGACAAGGCCACTCCCAAGACCATCATGAGGAAGTTCAGGCTCGGGAAGCAACCGCACAAGGAATTCAACGATCAATCGATAAAGGATGGCATGAGAGCTTCAGCCTTAGAACTTCATAGAAACAGTGGATCTTCTTCCACCTTAATGGACCGTAGCATGAACGAAATGCAATTGGAGGTCCAAAGACGGCTGCATGAACAAATTGAGGTACAAAGACATCTTCAATTGAGGATTGAGGCTCAAGGCAAATACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTCGCCGGCGAAAACATGGCCGCCGCCGCCGCCGCCGCCGGACGTTTCAAAACCACTTCCAACAACATTGGAACAACCACCAATCTTGTTTCAGACGCCGCCAACAAAGCCTTCATTTCACCTCCTCCTCCTCCTCACACCTTCCCTCCTTTTCAAGACATCAACAACCTATTTACCTCGGAACCACCGGCGCCTGCGCCGCCTCTTATCGACTGCCTCAAGAAGCCGAACCCCTTCATCTCCGACACCGGTAAGACCCCCATTTTCTGGGCCGATGATCTCCGGCTCCAGGACTTAGGAACCCCATCGGCCACCCTAGCGCCACCGCCGCCACCCATCAATGGCTCGGCTGACTTGGACCCTCAACAGCTGGAAATGTATGAAACTAAGCCACCGCCACTGCTGCTCTCCGTCGGCAACGATGTGATGACGAATGAGAAGAATTTCGACGTGTCGTTAAAGCTCGAGGGACCATCACCGCGACATTCGTCGGGGCATTCCGATGAGAAGGTGAATAACAATAATAACCCTACAATGTCACAATCACAGGGAAGAAATAACTCTCATTTGGGTTAA 1032 52.62 MFHATKKPSSMTSSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRKFRLGKQPHKEFNDQSIKDGMRASALELHRNSGSSSTLMDRSMNEMQLEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAAAAAAGRFKTTSNNIGTTTNLVSDAANKAFISPPPPPHTFPPFQDINNLFTSEPPAPAPPLIDCLKKPNPFISDTGKTPIFWADDLRLQDLGTPSATLAPPPPPINGSADLDPQQLEMYETKPPPLLLSVGNDVMTNEKNFDVSLKLEGPSPRHSSGHSDEKVNNNNNPTMSQSQGRNNSHLG 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6737489 6740495 - Cp4.1LG05g10290.1 Cpe05g01028 470233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01028 343 MobiDBLite consensus disorder prediction 305 343 - -
Cpe05g01028 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 253 - -
Cpe05g01028 343 MobiDBLite consensus disorder prediction 321 343 - -
Cpe05g01028 343 MobiDBLite consensus disorder prediction 252 271 - -
Cpe05g01028 343 SUPERFAMILY Homeodomain-like 33 69 IPR009057 -
Cpe05g01028 343 Pfam MYB-CC type transfactor, LHEQLE motif 113 152 IPR025756 -
Cpe05g01028 343 Gene3D - 33 137 - -
Cpe05g01028 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 253 IPR044848 GO:0003700
Cpe05g01028 343 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 34 69 IPR006447 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01028 Cpe15g00910 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01028 Cpe-Chr5:6737489 Cpe15g00910 Cpe-Chr15:8713480 9.66E-90 dispersed
Cpe16g00703 Cpe-Chr16:7223288 Cpe05g01028 Cpe-Chr5:6737489 1.28E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49562 PF14379 Myb_CC_LHEQLE 7.90E-21 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01028 - - csv:101203721 534.643