Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe05g01030 | ATGAGTTCGAACACCGCGTCTAGCTCCGGAGGTCCGGAATCGAACGATTCATCGTCTAATAGAAGGAATTCGAAGCGGCCTAAATATTCGAGGTTTACCCAGCAGGAGCTTCCAGCGTGTAAACCCATTCTCACACCAAAATGGGTGATTTCCGCGTTCATGTTAGTTAGCATTATCTTTGTTCCCATTGGAGTTGCTTCCTTGTTTGCTTCCAGAGATGTTGTTGAAATAATCGATCGTTATGAAACCGAGTGTATACCAGAAAGATTTAGAAACGACAAGGTTGGGTTCATACAGGGCCCTGTCAGTAAAAGCTGCAGCCGAAATATAACAGTGACGAAACGTATGAAGCAACCAATATATGTCTATTACCAGCTTGACAATTTCTATCAGAATCACCGCAGATACGTGCAGAGCCGTAGTGATAAGCAATTGAGAGATGCTGGCAGCGAGCGTGATGTAAGCTCTTGCAAGCCTGAAGACAATGCGAACGGGCAGCCAATCGTGCCCTGTGGTTTAATAGCTTGGAGTTTGTTTAATGATACTTATAGCTTCACCCTTAACAACAAACAAGTTGCTGTGAACAAGCAGGGTATCTCATGGAAGAGTGACCGGGAACACAAATTCGGCAAGAATGTATTTCCCAAAAACTTTCAGAATGGTACTCTGAAAGGTGGAAAAAGCCTTAATGAATCCATACCATTGAGTCAACAGGAAGATCTTATTGTGTGGATGAGAACTGCTGCTCTTCCCACATTTAGAAAGTTGTATGGAAAGATCGAGGTCGATCTTGAGAAGAACGATTTAATAGTTGTGAATTTGGAGAACAATTACAACACATACAGTTTTAACGGCAAGAAAAAGCTTGTCCTTTCCACAACTAGCTGGCTTGGTGGGAAGAATGACTTTCTTGGCATTGCATATCTTACAGTTGGTGGGTTATGCTTCTTCTTGGCAATGGTTTTCACAGTCGTCTATCTTGTTAAGCCAAGGCGACTTGGGGACCCAACATATCTATCATGGAATAGAAACCCGAGTGGGCACTAA | 1047 | 42.98 | MSSNTASSSGGPESNDSSSNRRNSKRPKYSRFTQQELPACKPILTPKWVISAFMLVSIIFVPIGVASLFASRDVVEIIDRYETECIPERFRNDKVGFIQGPVSKSCSRNITVTKRMKQPIYVYYQLDNFYQNHRRYVQSRSDKQLRDAGSERDVSSCKPEDNANGQPIVPCGLIAWSLFNDTYSFTLNNKQVAVNKQGISWKSDREHKFGKNVFPKNFQNGTLKGGKSLNESIPLSQQEDLIVWMRTAALPTFRKLYGKIEVDLEKNDLIVVNLENNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLAMVFTVVYLVKPRRLGDPTYLSWNRNPSGH | 348 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 6762928 | 6766492 | + | Cp4.1LG05g10250.1 | Cpe05g01030 | 470235 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe05g01030 | 348 | MobiDBLite | consensus disorder prediction | 141 | 161 | - | - | |
| Cpe05g01030 | 348 | PIRSF | Lem3/Cdc50 | 1 | 344 | IPR005045 | GO:0016020 | |
| Cpe05g01030 | 348 | PANTHER | ALA-INTERACTING SUBUNIT 3 | 7 | 347 | - | - | |
| Cpe05g01030 | 348 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Cpe05g01030 | 348 | Pfam | LEM3 (ligand-effect modulator 3) family / CDC50 family | 68 | 332 | IPR005045 | GO:0016020 | |
| Cpe05g01030 | 348 | MobiDBLite | consensus disorder prediction | 141 | 158 | - | - | |
| Cpe05g01030 | 348 | PANTHER | CELL CYCLE CONTROL PROTEIN 50 | 7 | 347 | IPR005045 | GO:0016020 | |
| Cpe05g01030 | 348 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe05g01030 | Cpe16g00705 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g01480 | Cpe-Chr2:12732392 | Cpe05g01030 | Cpe-Chr5:6762928 | 7.70E-48 | dispersed | |
| Cpe03g00758 | Cpe-Chr3:4675453 | Cpe05g01030 | Cpe-Chr5:6762928 | 3.16E-179 | dispersed | |
| Cpe05g01030 | Cpe-Chr5:6762928 | Cpe19g01151 | Cpe-Chr19:7715446 | 2.21E-143 | dispersed | |
| Cpe16g00705 | Cpe-Chr16:7243944 | Cpe05g01030 | Cpe-Chr5:6762928 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe05g01030 | - | - | csv:101216400 | 629.402 |