Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01032 ATGACGGATAATCCCAGAACAGATTCTTTCAGAACAGAGCTTTTGTCACCGGAGGGTGTGGCTGCTGGAACAGATGGAATGGTGACGAAGATTCCCTCGTGGCGACTGAACATGGACGAGTTCTGCTTGCCTGCTACAAACAAGAGATCTTATCATGGCGTTGTTTATTACTGGAAGTCATGGAAGAGACAGAGAAAGGTTGCTACGTACTATGAAAGGCAGAAAAGTCTTCTAAAAGGATTCAATGAGGTTGACTCCTACAATGAACTGGGTATTGTACCTGGACCTTTAACCGAGGATGAAAAGAAGCAAGAGGCGTACCGTGAGAGACTGGCAATATATGCATCCAACATAGCTAACATGGTGATCTTCGTTGCGAAAGTATATGCTTCAGTTGAGAGCAGATCACTTGCAGTTATAGCTTCAACACTAGATTCCCTGTTGGATCTTTTATCAGGGTTTATATTATGGTTTACAGCTAATGCTATGAGAAAGCCAAATCAGTATCGTTATCCTATCGGAAAGAATCGAATGCAACCAGGAATCGTCGTGTTTGCATCCGTCATGGCAACTCTTGGAATACAAATATTACTTGAATCAGCTCGAGAACTTATTTCCAAGGCTCAACCAGATAGAGATCCAGATAAAGTACGATGGATGGTCGGAATAATGGCATCTGTGACAGTAGTGAAACTATGCCTCACAGTATACTGTCGCAGATTCAAAAATGAAATTATAAGAGCCTATGCCCAGGACCATTTCTTTGATGTAATTACAAATACAATTGGACTTGCGACTGCCCTTTTGGCTATTAGATTCTACTGGTGGCTTGATCCCCTTGGGGCTATCCTAATAGCATTGTACACAATCAGCAACTGGTCAAAGACAGTAATGGAAAATGTATGGTCGCTAATAGGGAGGACTGCCCCGCCAGACTACTTGGCTAAGCTAACATATCTAGTCTGGAATCATCATGAGGAAATCAAAAACATAGATACAGTGAGAGCATATACCTTTGGATGCAACTATTTTGTGGAGGTGGACATAGTGTTGCCTGGGGAAACGTCTCTTAGTCAAGCCCATGACATTGGAGAAACACTCCAAGATAAACTTGAACAGCTTGATGAGGTTGATAGAGCTTTTGTTCATGTGGATCATGAGTTCACTCATAAGCCAGAGCACAAGCCTAAAGATTCA 1197 42.27 MTDNPRTDSFRTELLSPEGVAAGTDGMVTKIPSWRLNMDEFCLPATNKRSYHGVVYYWKSWKRQRKVATYYERQKSLLKGFNEVDSYNELGIVPGPLTEDEKKQEAYRERLAIYASNIANMVIFVAKVYASVESRSLAVIASTLDSLLDLLSGFILWFTANAMRKPNQYRYPIGKNRMQPGIVVFASVMATLGIQILLESARELISKAQPDRDPDKVRWMVGIMASVTVVKLCLTVYCRRFKNEIIRAYAQDHFFDVITNTIGLATALLAIRFYWWLDPLGAILIALYTISNWSKTVMENVWSLIGRTAPPDYLAKLTYLVWNHHEEIKNIDTVRAYTFGCNYFVEVDIVLPGETSLSQAHDIGETLQDKLEQLDEVDRAFVHVDHEFTHKPEHKPKDS 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6770540 6772390 - Cp4.1LG05g10300.1 Cpe05g01032 470237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01032 399 TIGRFAM CDF: cation diffusion facilitator family transporter 113 387 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cpe05g01032 399 Pfam Cation efflux family 114 304 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cpe05g01032 399 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 309 385 IPR036837 -
Cpe05g01032 399 Gene3D Cation efflux protein, cytoplasmic domain 311 386 IPR036837 -
Cpe05g01032 399 Gene3D Cation efflux protein transmembrane domain 110 304 IPR027469 -
Cpe05g01032 399 Pfam Dimerisation domain of Zinc Transporter 313 385 IPR027470 -
Cpe05g01032 399 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 2 398 - -
Cpe05g01032 399 PANTHER CATION DIFFUSION FACILITATOR FAMILY TRANSPORTER 2 398 - -
Cpe05g01032 399 SUPERFAMILY Cation efflux protein transmembrane domain-like 108 306 IPR027469 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01032 - - - csv:101216157 729.554
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01032 Cpe16g00708 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01032 Cpe-Chr5:6770540 Cpe18g00137 Cpe-Chr18:2918424 5.59E-111 dispersed
Cpe16g00708 Cpe-Chr16:7252016 Cpe05g01032 Cpe-Chr5:6770540 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1151 Blo04g00461 . . . . . . . . . . . . . . . Cpe16g00708 . . . . . . . Cla02g01828 Cam02g1937 Cec02g1964 Cco02g2003 Clacu02g1917 Cmu02g1866 Cre02g2179 . . . . . . . Cme11g01635 . . . . Bpe15g00920 . Bma03g00494 . . . . . . . . . Cpe05g01032 Bhi10g00937 . . . . . . . . . . . . . . Csa06g01150 Chy11g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005363 3 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01032 Cpe_Chr05 FPKM 15.544716 15.818662 15.946441 14.363313 17.253029 16.318342 17.790712 18.122562 15.561869 13.058161