Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01033 ATGGCCTTCTCACAATCCTTTGCTGGATCTGCCATTTCTTCTTCTCTGATCGATGCCTCTCGTGCTGAGTCGTCGTCGGTCCACTGCCGGAAGGGGAGCTCTTTAAAGCTTCAATCTGGTGTTTTTGGAACTACTATCTCGAGTGGGACGTCTTCTTTACAGATAGGGTTATCTAAAAATCGAGCTATCCAACCCATCAAAGCTACAGCCACCGAGGCACCTCCGACGGTACAAAGAACTCCGAGTGGTGGGAAGACCAAGATTGGAATCAATGGTTTTGGACGAATTGGAAGACTGGTTTTACGCATTGCAACCTCGAGGGATGATATTGATGTTGTAGCAGTTAATGATCCATTTGTTGATGCTAAGTACATGGTAATGATCCATTTGGATTCTGTTATCCAGGCTTACATGTTCAAATACGATTCTACTCATGGTGTTTTTGATGGAACCATCAAGGTTCTTAGTGATTCAACTTTGGAAATTAATGGGAAGCAGATCAAAGTTGTAAGCAAAAGGGAGCCTGCAGATATCCCTTGGGGTGATTATGGAGCTGAATATGTTGTCGAGTCCTCTGGAGTTTTCACTACAAAAGACAAGGCTTCAGCACACTTGAAGGTCGTTCATGAGGAATTTGGTATTGTTGAAGGTCTAATGACAACAGTGCATGCAACGACAGCAACACAAAAGACTGTTGATGGCCCTTCAATGAAGGATTGGAGAGGAGGCCGTGGTGCTGCACAAAATATAATTCCTAGCTCTACTGGTGCTGCCAAGGCTGTTGGTAAAGTTCTTCCAGAGCTAAACGGAAAACTTACTGGAATGGCTTTCCGTGTCCCAACACCCAATGTATCTGTTGTGGACTTAACCTGCCGACTTGAAAAGAGTGCTACATATGAAGATGTAAAGGCAGCAGTAAAGTATGACTTGCACCCAACCAGTGTGCCTTTCGTTAGGTATGCATCCGAAGGTCCATTGCAAGGCATTCTTGGATATACAGATGAGGATGTTGTCTCTACTGATTTTCTCGGTGACTCGAGGTCTAGTATATTTGATGCGAAGGCTGGAATTGGTCTCAGCACCTCATTCGTGAAGCTGGTGACTTGGTACGACAATGAATGGGGATACAGCAACCGAGTACTGGATCTTATTGAGCACATGGCATTGGTTTCAGCCTTGAACAACTAA 1188 44.61 MAFSQSFAGSAISSSLIDASRAESSSVHCRKGSSLKLQSGVFGTTISSGTSSLQIGLSKNRAIQPIKATATEAPPTVQRTPSGGKTKIGINGFGRIGRLVLRIATSRDDIDVVAVNDPFVDAKYMVMIHLDSVIQAYMFKYDSTHGVFDGTIKVLSDSTLEINGKQIKVVSKREPADIPWGDYGAEYVVESSGVFTTKDKASAHLKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSATYEDVKAAVKYDLHPTSVPFVRYASEGPLQGILGYTDEDVVSTDFLGDSRSSIFDAKAGIGLSTSFVKLVTWYDNEWGYSNRVLDLIEHMALVSALNN 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6773286 6777713 - Cp4.1LG05g10310.1 Cpe05g01033 470238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01033 395 Gene3D - 78 209 - -
Cpe05g01033 395 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 205 370 IPR020829 GO:0016620
Cpe05g01033 395 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 206 392 - -
Cpe05g01033 395 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 19 206 - -
Cpe05g01033 395 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 206 392 IPR020831 GO:0016620
Cpe05g01033 395 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 87 198 IPR020828 GO:0051287
Cpe05g01033 395 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 19 206 IPR020831 GO:0016620
Cpe05g01033 395 SMART gp_dh_n_7 86 216 IPR020828 GO:0051287
Cpe05g01033 395 Gene3D - 373 385 - -
Cpe05g01033 395 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 85 218 IPR036291 -
Cpe05g01033 395 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 204 370 - -
Cpe05g01033 395 Gene3D Dihydrodipicolinate Reductase; domain 2 210 372 - -
Cpe05g01033 395 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 217 233 IPR020831 GO:0016620
Cpe05g01033 395 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 274 291 IPR020831 GO:0016620
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00865 Cpe05g01033 CCT
Cpe05g01033 Cpe16g00709 CCT
Cpe05g01033 Cpe15g00903 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00675 Cpe-Chr3:4037744 Cpe05g01033 Cpe-Chr5:6773286 3.07E-76 dispersed
Cpe04g00865 Cpe-Chr4:7943557 Cpe05g01033 Cpe-Chr5:6773286 0 dispersed
Cpe05g01033 Cpe-Chr5:6773286 Cpe15g00903 Cpe-Chr15:8679143 0 dispersed
Cpe16g00709 Cpe-Chr16:7255572 Cpe05g01033 Cpe-Chr5:6773286 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01033 K00134 - csv:101203472 616.305