Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01034 ATGGCTTCTGCAGCTTCCCGCACCACTTTCCATCTTCTTCCCACAAAATCCTCTTACACTTCTTCAACCCGCTCTGCCCTTCTTCAATTTTCGCCCACCGCCGCTTCCTCTAACTCAATTCGCCTTCGCGCCGCTGCAACTCAGCGCTTAGGTTTCGCTGCCGCAGACCCACTTTTCTCCCTCCATGTGGCTTCCAAGATTCGGTCGTTTAGGGGCAAGGCCTCGAGGGGTGTGGTGTCCATGGCTAAGAAGAGTGTTGGGGATTTGACTGCGGCTGACTTGAAGGGGAAGAAAGTGTTCGTGAGGGCTGATTTGAATGTGCCGTTGGATGATAATCAGAATATTACTGATGATACTAGGATCAGAGCTGCTATCCCTACGATCAAGTATTTGACTGATAATGGAGCTAAAGTGCTTTTATCCAGCCATCTGGGACGACCAAAAGGTGTGACTCCAAAATACAGCTTGGCACCTCTTGTGCCTAGGCTGTCTGAACTCCTTGGCATTGAGGTTGTGAAGGCTGATGACTGCATTGGTCCCGAGGTCGAAAAATTGGTCGCTTCCCTGCCCGAGGGTGGAGTTCTTCTCCTCGAAAATGTTCGATTCTACAAGGAAGAAGAGAAAAATGAGCCAGAGTTTGCAAAGAAGCTGGCTTCTCTAGCTGATCTTTATGTGAACGATGCATTTGGAACTGCCCACAGAGCTCATGCTTCAACTGAGGGAGTCACCAAGTTTTTGAAGCCATCCGTGGCTGGTTTCCTCTTGCAAAAGGAACTCGACTATCTAGTGGGGGCCGTGTCAAGCCCAAAGAGACCATTTGCTGCTATTGTTGGTGGTTCAAAGGTCTCGTCGAAGATCGGAGTGATCGAGTCACTTCTAGAAAAGTGTGACATCCTACTTCTTGGTGGTGGAATGATATTTACATTTTACAAGGCACAGGGACTTTCCGTTGGCTCGTCTCTGGTCGAAGAGGATAAGCTAGATTTAGCAACCACGCTCCTCGCGAAGGCCAAGGCGAAAGGAGTATCGCTTCTACTACCAACCGATGTCGTCATTGCAGACAAGTTTGCTCCCGACGCAAACAGCAAGATCGTCCCTGCATCTGCCATCCCTGATGGATGGATGGGACTCGACATTGGACCAGATTCTGTAAAGACATTCAATGATGCGTTGGACACTACCCAAACTATCATCTGGAATGGACCGATGGGAGTGTTCGAGTTCGACAAGTTTGCAGTCGGAACGGAGGCGATCGCTAAGAAACTCGCGGAGCTCAGTGGAAAGGGGGTGACAACCATCATCGGCGGTGGAGACTCGGTTGCAGCTGTGGAGAAGGTAGGAGTTGCGAGCGTCATGAGTCACATTTCAACTGGGGGTGGTGCTAGTTTGGAGTTGTTGGAAGGCAAAGAACTTCCCGGCGTCCTTGCTCTTGACGAGGCCGTACCCGTTGCCGTGTAG 1458 50.48 MASAASRTTFHLLPTKSSYTSSTRSALLQFSPTAASSNSIRLRAAATQRLGFAAADPLFSLHVASKIRSFRGKASRGVVSMAKKSVGDLTAADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLTDNGAKVLLSSHLGRPKGVTPKYSLAPLVPRLSELLGIEVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLDLATTLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNDALDTTQTIIWNGPMGVFEFDKFAVGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKELPGVLALDEAVPVAV 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6779458 6783793 - Cp4.1LG05g10380.1 Cpe05g01034 470239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01034 485 CDD Phosphoglycerate_kinase 89 479 IPR001576 GO:0004618|GO:0006096
Cpe05g01034 485 ProSitePatterns Phosphoglycerate kinase signature. 98 108 IPR015911 GO:0004618|GO:0006096
Cpe05g01034 485 PRINTS Phosphoglycerate kinase family signature 93 109 IPR001576 GO:0004618|GO:0006096
Cpe05g01034 485 PRINTS Phosphoglycerate kinase family signature 115 137 IPR001576 GO:0004618|GO:0006096
Cpe05g01034 485 PRINTS Phosphoglycerate kinase family signature 192 207 IPR001576 GO:0004618|GO:0006096
Cpe05g01034 485 PRINTS Phosphoglycerate kinase family signature 220 242 IPR001576 GO:0004618|GO:0006096
Cpe05g01034 485 PRINTS Phosphoglycerate kinase family signature 251 273 IPR001576 GO:0004618|GO:0006096
Cpe05g01034 485 PRINTS Phosphoglycerate kinase family signature 274 293 IPR001576 GO:0004618|GO:0006096
Cpe05g01034 485 PRINTS Phosphoglycerate kinase family signature 396 421 IPR001576 GO:0004618|GO:0006096
Cpe05g01034 485 PRINTS Phosphoglycerate kinase family signature 432 443 IPR001576 GO:0004618|GO:0006096
Cpe05g01034 485 PRINTS Phosphoglycerate kinase family signature 455 472 IPR001576 GO:0004618|GO:0006096
Cpe05g01034 485 Pfam Phosphoglycerate kinase 91 469 IPR001576 GO:0004618|GO:0006096
Cpe05g01034 485 Hamap Phosphoglycerate kinase [pgk]. 88 479 IPR001576 GO:0004618|GO:0006096
Cpe05g01034 485 SUPERFAMILY Phosphoglycerate kinase 88 479 IPR036043 GO:0004618|GO:0006096
Cpe05g01034 485 PANTHER PHOSPHOGLYCERATE KINASE 1 480 IPR001576 GO:0004618|GO:0006096
Cpe05g01034 485 Gene3D - 154 480 IPR015824 GO:0004618|GO:0006096
Cpe05g01034 485 Gene3D - 62 152 IPR015824 GO:0004618|GO:0006096
Cpe05g01034 485 PANTHER PHOSPHOGLYCERATE KINASE 1 480 - -
Cpe05g01034 485 Gene3D - 268 455 IPR015824 GO:0004618|GO:0006096
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01034 Cpe16g00710 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00189 Cpe-Chr3:943904 Cpe05g01034 Cpe-Chr5:6779458 7.16E-41 dispersed
Cpe04g00864 Cpe-Chr4:7940374 Cpe05g01034 Cpe-Chr5:6779458 0 dispersed
Cpe05g01034 Cpe-Chr5:6779458 Cpe15g00901 Cpe-Chr15:8668768 0 dispersed
Cpe16g00710 Cpe-Chr16:7260439 Cpe05g01034 Cpe-Chr5:6779458 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01034 K00927 - csv:101215670 867.455