Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01035 ATGGATGTTTCAACCCGTTTCAGACCGAACAAGCTTGTCTCTCCGTCGACTTCGTTCGTCCAAGGGTCTCGAAATGGCATTCTTTTCACTATACCAGCCTGGCGCCGGGCTAAGTACTCCCGCCAGAGGACGAAATTTCGAGTTCTAGGATCCGCTGATGGTAATGGAGGTGACGGGTCTCCTTGGGGAAGTTTCAGTAGGTCAGTTCGTCGCGGCTCCGAGAGGTTCTGGTTGACTTTTGGCGAGTCTTTGAGAAAGGAAACTGGGTTTGATTTGAAAAATACTGATGTGAAGTTGGCTGAGATTTTTGGGAAGGCTAATGAACGGCTAGATAATATAGGAGCTGAACTGGAGAGGTTTAAGACTGAAAAATGGCCGGAGTTTGTAAACTGGAACAGTTGGGAGCGTTGGAAGGATCTCAAGAACTGGGAGCCAAAACGAGTTGGTGCCTTGTTTCTCTTTGCTTTTGCTATAATTAGTTATTGTCAAAGAATTCATATGGTAGTTCGAGCACCTTTTGTAGACCGCGAAAGAAAACAGCTAACGGAGGCTTATATGGAGGCATTGATTCCTGAGCCATCTCCTTCTAATATTAGAAAGTTTAAGAAAGGTTTATGGAGGAGAACTACGCCCAAAGGTCTGAAAATAAAGAAATTTATTGAAGGAACTGATGGGACCCTTGTTCAAGATTCTTCTTACGTTGGAGAAGATGCATGGGATGATGATTCGGAGCTTATACAAGATAATGTTAAGAAAGTTATTGACAGTGATGAAACATTTAAGGGTGATGAAAAGGAGAAGATAAAGGAACAGTTGGGGATATCAGGACAAGAAGATACTGGAACTTGGCGCGAAAGGCTACAGATGTGGAAGGAAATCATTAGGAAAGAGAAGTTAGCTGAGGCTATGGATTCTCTCCGTGCTAAATATGTTCTTGAATTTGACATGAAAGAGGTTGAAAAGAGTCTTCGTAAGGATGTGGTAGAAAAAAAAACAGATTCGCAAGGAACAAGGGCACTTTGGATATCTAAGAGATGGTGGCGTTATCGACCTAAACTTCCTTACACATACTTTCTTGACAAACTTGATTGCTCTGAGGTTGCTGCTGTTGTCTTCACGGAGGACTTGAAAAGATTGTACGTGACAATGAAAGATGGTTTTCCATTAGAATATACTGTTGATATTCCCCTTGATCCTCACTTGTTTGAGGCTATCACCAGTTCTGGAGCTGAAGTTGATCTCCTTCAGAAGCGTCAAATCCACTATTTTCTCAAAGTTCTGATTGCATTGCTGCCTGGAATACTGATCCTATTGGTTATTAGAGAGTCTGTTTTGCTTCTAAGTATTACTTCTAAGCGTTTTCTTTATAAAAAATACAACCAAATTTTTGACTTGGCGCATGCAGAAAACTTTATCCTGCCAGCGGAGAATGTTGGTGAAACAACATCAATTCTCAAGGAAGTAATTTTGGGTGGTGATGTCTGGGATCTTCTTGATGAGTTGATGATTTATATGCAAAATCCTATGCAGTACTATGAAAAAGGGGTGCAGTTTGTGCGGGGTGTTCTCCTTTCTGGGCCGCCTGGTACGGGGAAGACACTTTTTGCAAGGACACTTGCCAGGAAAAGTGGGTTGCCGTTTGTGTTTGCATCAGGGGCAGAGTTCACAGATAGTGAAAAAAGTGGTGTAGCAAGGATCAATGAGATGTTTTCTATTGCAAGAAGAAATGCTCCATCGTTTGTTTTTGTGGATGAAATTGACGCTATTGCTGGAAGGCATGCAAGGAATGATCCAAGAAGAAGGGGAACCTTTGAGGCTTTTATTTCGCAACTTGATGGCGAGAAGGAAAAAACTGGTGTTGATCGGTTCTCACTTAGACAAGCTGTGATATTCATCTGTGCTACTAATAGGCCAGATGAGTTAGACCTTGAATTTGTTCGACCTGGACGCATTGATCGTCGTTTGTACATAGGGTTACCAGATGCAAAACAGAGAGTGAAAATATTTGGTGTGCACAGTGCTGGAAAGCCACTTGCAGAGGACGTTGATTTTGGGAAGCTTGTCTTCCGTACAGTTGGTTTTTCTGGAGCAGATATACAGAATCTTGTCAATGAGGCAGCAATAATGTCGGTGAGGAAGGGACACTCCAAAATCAACCAGCAAGACATTGTTGATGTTCTAGATAAACAGTTGCTTGAGGGTATGGGTGTACTTCTCACCGAAGAAGAGCAACAGAGAAGTGAAGAAAGAGTGTCTATTGAGAAAAGGAGACTGCTGGCTGTACATGAAGCTGGTCATATACTATTAGCTCACTTGTTCCCTCGTTTTGATTGGCACGCCTTTTCTCAGCTTTTACCAGGGGGCAAGGAAACAGCAATTACCGTTTTCTTCCCTCGAGAAGATATGGTCGACCAAGGTTACACCACCTTTGGTTACATGAAAATGCAAATGGTGGTAGCTCACGGAGGGCGCTGCGCCGAACGTCTCATATTTGGTAATGACATAACCGACGGAGGAAAGGATGATCTAGAGAAAATAACGAAGATTGCTCGGGAGATGGTAATCAGCCCTCAGAATTCAAGACTTGGGCTGGCTGCTTTAACCAAGAATATTGGGATGGTGGATCGACCCGATAATCCAGATGGAGAATTGATAAGATACAGGTGGGACGATCCACAAGTGATTCCGGCCAACATGACGCCCGAATTGTCTGAGCTGTTTTCCCGGGAGCTGGCAAGGTATATTGAAGAGACAGAGGAATTGGCGATGAATGGTCTGAGGGAAAACAGGCACATACTTGAGATGCTTACTGAGGAACTGCTGGAAAAGTCTAGAATAACTGGATTGGAAGTTGAAGAGAAAATGAAGGGTCTGTCACCAGCCATGTTCGAGGACTTCATCAAGCCATTCCAAATAGACTTGGATGCGGAGGGAGCACTGCCTCATAAGGATAAACTGCGATACCAACCTCTAGACATATACCCCGCACCGCTGCACAGATGTTGA 3006 43.48 MDVSTRFRPNKLVSPSTSFVQGSRNGILFTIPAWRRAKYSRQRTKFRVLGSADGNGGDGSPWGSFSRSVRRGSERFWLTFGESLRKETGFDLKNTDVKLAEIFGKANERLDNIGAELERFKTEKWPEFVNWNSWERWKDLKNWEPKRVGALFLFAFAIISYCQRIHMVVRAPFVDRERKQLTEAYMEALIPEPSPSNIRKFKKGLWRRTTPKGLKIKKFIEGTDGTLVQDSSYVGEDAWDDDSELIQDNVKKVIDSDETFKGDEKEKIKEQLGISGQEDTGTWRERLQMWKEIIRKEKLAEAMDSLRAKYVLEFDMKEVEKSLRKDVVEKKTDSQGTRALWISKRWWRYRPKLPYTYFLDKLDCSEVAAVVFTEDLKRLYVTMKDGFPLEYTVDIPLDPHLFEAITSSGAEVDLLQKRQIHYFLKVLIALLPGILILLVIRESVLLLSITSKRFLYKKYNQIFDLAHAENFILPAENVGETTSILKEVILGGDVWDLLDELMIYMQNPMQYYEKGVQFVRGVLLSGPPGTGKTLFARTLARKSGLPFVFASGAEFTDSEKSGVARINEMFSIARRNAPSFVFVDEIDAIAGRHARNDPRRRGTFEAFISQLDGEKEKTGVDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVKIFGVHSAGKPLAEDVDFGKLVFRTVGFSGADIQNLVNEAAIMSVRKGHSKINQQDIVDVLDKQLLEGMGVLLTEEEQQRSEERVSIEKRRLLAVHEAGHILLAHLFPRFDWHAFSQLLPGGKETAITVFFPREDMVDQGYTTFGYMKMQMVVAHGGRCAERLIFGNDITDGGKDDLEKITKIAREMVISPQNSRLGLAALTKNIGMVDRPDNPDGELIRYRWDDPQVIPANMTPELSELFSRELARYIEETEELAMNGLRENRHILEMLTEELLEKSRITGLEVEEKMKGLSPAMFEDFIKPFQIDLDAEGALPHKDKLRYQPLDIYPAPLHRC 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6785021 6798303 + Cp4.1LG05g10360.1 Cpe05g01035 470240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01035 1001 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 9 1001 - -
Cpe05g01035 1001 Gene3D - 661 732 - -
Cpe05g01035 1001 SMART AAA_5 518 661 IPR003593 -
Cpe05g01035 1001 Pfam ATPase family associated with various cellular activities (AAA) 522 658 IPR003959 GO:0005524|GO:0016887
Cpe05g01035 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 729 IPR027417 -
Cpe05g01035 1001 Gene3D - 479 660 IPR027417 -
Cpe05g01035 1001 CDD AAA 520 659 - -
Cpe05g01035 1001 Gene3D Peptidase M41 744 959 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cpe05g01035 1001 Pfam Peptidase family M41 751 952 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cpe05g01035 1001 PANTHER ATP-DEPENDENT PROTEASE 9 1001 - -
Cpe05g01035 1001 SUPERFAMILY FtsH protease domain-like 754 964 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cpe05g01035 1001 Pfam AAA+ lid domain 681 723 IPR041569 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01035 K03798 ftsH, hflB; cell division protease FtsH [EC:3.4.24.-] - csv:101215439 1728.38
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01035 Cpe16g00719 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01035 Cpe-Chr5:6785021 Cpe06g00033 Cpe-Chr6:168873 6.33E-83 dispersed
Cpe05g01035 Cpe-Chr5:6785021 Cpe02g00045 Cpe-Chr2:230234 1.27E-83 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1084 . . . . . . . . . . . . . . . . Cpe16g00719 . . . . . . . Cla02g01816 Cam02g1922 Cec02g1943 Cco02g1987 Clacu02g1904 Cmu02g1851 Cre02g2165 . . . . . . . Cme11g01598 . . . . . . . Bma12g00594 . . . . . . . . Cpe05g01035 Bhi10g00960 Tan05g0605 . . Hepe08g0632 . . . . . . . . . . Csa06g01166 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009820 1 2 2 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01035 Cpe_Chr05 FPKM 9.36327 11.081692 9.286284 9.102676 8.06807 6.366424 8.550746 5.864242 6.475523 5.900146