Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01035 ATGGATGTTTCAACCCGTTTCAGACCGAACAAGCTTGTCTCTCCGTCGACTTCGTTCGTCCAAGGGTCTCGAAATGGCATTCTTTTCACTATACCAGCCTGGCGCCGGGCTAAGTACTCCCGCCAGAGGACGAAATTTCGAGTTCTAGGATCCGCTGATGGTAATGGAGGTGACGGGTCTCCTTGGGGAAGTTTCAGTAGGTCAGTTCGTCGCGGCTCCGAGAGGTTCTGGTTGACTTTTGGCGAGTCTTTGAGAAAGGAAACTGGGTTTGATTTGAAAAATACTGATGTGAAGTTGGCTGAGATTTTTGGGAAGGCTAATGAACGGCTAGATAATATAGGAGCTGAACTGGAGAGGTTTAAGACTGAAAAATGGCCGGAGTTTGTAAACTGGAACAGTTGGGAGCGTTGGAAGGATCTCAAGAACTGGGAGCCAAAACGAGTTGGTGCCTTGTTTCTCTTTGCTTTTGCTATAATTAGTTATTGTCAAAGAATTCATATGGTAGTTCGAGCACCTTTTGTAGACCGCGAAAGAAAACAGCTAACGGAGGCTTATATGGAGGCATTGATTCCTGAGCCATCTCCTTCTAATATTAGAAAGTTTAAGAAAGGTTTATGGAGGAGAACTACGCCCAAAGGTCTGAAAATAAAGAAATTTATTGAAGGAACTGATGGGACCCTTGTTCAAGATTCTTCTTACGTTGGAGAAGATGCATGGGATGATGATTCGGAGCTTATACAAGATAATGTTAAGAAAGTTATTGACAGTGATGAAACATTTAAGGGTGATGAAAAGGAGAAGATAAAGGAACAGTTGGGGATATCAGGACAAGAAGATACTGGAACTTGGCGCGAAAGGCTACAGATGTGGAAGGAAATCATTAGGAAAGAGAAGTTAGCTGAGGCTATGGATTCTCTCCGTGCTAAATATGTTCTTGAATTTGACATGAAAGAGGTTGAAAAGAGTCTTCGTAAGGATGTGGTAGAAAAAAAAACAGATTCGCAAGGAACAAGGGCACTTTGGATATCTAAGAGATGGTGGCGTTATCGACCTAAACTTCCTTACACATACTTTCTTGACAAACTTGATTGCTCTGAGGTTGCTGCTGTTGTCTTCACGGAGGACTTGAAAAGATTGTACGTGACAATGAAAGATGGTTTTCCATTAGAATATACTGTTGATATTCCCCTTGATCCTCACTTGTTTGAGGCTATCACCAGTTCTGGAGCTGAAGTTGATCTCCTTCAGAAGCGTCAAATCCACTATTTTCTCAAAGTTCTGATTGCATTGCTGCCTGGAATACTGATCCTATTGGTTATTAGAGAGTCTGTTTTGCTTCTAAGTATTACTTCTAAGCGTTTTCTTTATAAAAAATACAACCAAATTTTTGACTTGGCGCATGCAGAAAACTTTATCCTGCCAGCGGAGAATGTTGGTGAAACAACATCAATTCTCAAGGAAGTAATTTTGGGTGGTGATGTCTGGGATCTTCTTGATGAGTTGATGATTTATATGCAAAATCCTATGCAGTACTATGAAAAAGGGGTGCAGTTTGTGCGGGGTGTTCTCCTTTCTGGGCCGCCTGGTACGGGGAAGACACTTTTTGCAAGGACACTTGCCAGGAAAAGTGGGTTGCCGTTTGTGTTTGCATCAGGGGCAGAGTTCACAGATAGTGAAAAAAGTGGTGTAGCAAGGATCAATGAGATGTTTTCTATTGCAAGAAGAAATGCTCCATCGTTTGTTTTTGTGGATGAAATTGACGCTATTGCTGGAAGGCATGCAAGGAATGATCCAAGAAGAAGGGGAACCTTTGAGGCTTTTATTTCGCAACTTGATGGCGAGAAGGAAAAAACTGGTGTTGATCGGTTCTCACTTAGACAAGCTGTGATATTCATCTGTGCTACTAATAGGCCAGATGAGTTAGACCTTGAATTTGTTCGACCTGGACGCATTGATCGTCGTTTGTACATAGGGTTACCAGATGCAAAACAGAGAGTGAAAATATTTGGTGTGCACAGTGCTGGAAAGCCACTTGCAGAGGACGTTGATTTTGGGAAGCTTGTCTTCCGTACAGTTGGTTTTTCTGGAGCAGATATACAGAATCTTGTCAATGAGGCAGCAATAATGTCGGTGAGGAAGGGACACTCCAAAATCAACCAGCAAGACATTGTTGATGTTCTAGATAAACAGTTGCTTGAGGGTATGGGTGTACTTCTCACCGAAGAAGAGCAACAGAGAAGTGAAGAAAGAGTGTCTATTGAGAAAAGGAGACTGCTGGCTGTACATGAAGCTGGTCATATACTATTAGCTCACTTGTTCCCTCGTTTTGATTGGCACGCCTTTTCTCAGCTTTTACCAGGGGGCAAGGAAACAGCAATTACCGTTTTCTTCCCTCGAGAAGATATGGTCGACCAAGGTTACACCACCTTTGGTTACATGAAAATGCAAATGGTGGTAGCTCACGGAGGGCGCTGCGCCGAACGTCTCATATTTGGTAATGACATAACCGACGGAGGAAAGGATGATCTAGAGAAAATAACGAAGATTGCTCGGGAGATGGTAATCAGCCCTCAGAATTCAAGACTTGGGCTGGCTGCTTTAACCAAGAATATTGGGATGGTGGATCGACCCGATAATCCAGATGGAGAATTGATAAGATACAGGTGGGACGATCCACAAGTGATTCCGGCCAACATGACGCCCGAATTGTCTGAGCTGTTTTCCCGGGAGCTGGCAAGGTATATTGAAGAGACAGAGGAATTGGCGATGAATGGTCTGAGGGAAAACAGGCACATACTTGAGATGCTTACTGAGGAACTGCTGGAAAAGTCTAGAATAACTGGATTGGAAGTTGAAGAGAAAATGAAGGGTCTGTCACCAGCCATGTTCGAGGACTTCATCAAGCCATTCCAAATAGACTTGGATGCGGAGGGAGCACTGCCTCATAAGGATAAACTGCGATACCAACCTCTAGACATATACCCCGCACCGCTGCACAGATGTTGA 3006 43.48 MDVSTRFRPNKLVSPSTSFVQGSRNGILFTIPAWRRAKYSRQRTKFRVLGSADGNGGDGSPWGSFSRSVRRGSERFWLTFGESLRKETGFDLKNTDVKLAEIFGKANERLDNIGAELERFKTEKWPEFVNWNSWERWKDLKNWEPKRVGALFLFAFAIISYCQRIHMVVRAPFVDRERKQLTEAYMEALIPEPSPSNIRKFKKGLWRRTTPKGLKIKKFIEGTDGTLVQDSSYVGEDAWDDDSELIQDNVKKVIDSDETFKGDEKEKIKEQLGISGQEDTGTWRERLQMWKEIIRKEKLAEAMDSLRAKYVLEFDMKEVEKSLRKDVVEKKTDSQGTRALWISKRWWRYRPKLPYTYFLDKLDCSEVAAVVFTEDLKRLYVTMKDGFPLEYTVDIPLDPHLFEAITSSGAEVDLLQKRQIHYFLKVLIALLPGILILLVIRESVLLLSITSKRFLYKKYNQIFDLAHAENFILPAENVGETTSILKEVILGGDVWDLLDELMIYMQNPMQYYEKGVQFVRGVLLSGPPGTGKTLFARTLARKSGLPFVFASGAEFTDSEKSGVARINEMFSIARRNAPSFVFVDEIDAIAGRHARNDPRRRGTFEAFISQLDGEKEKTGVDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVKIFGVHSAGKPLAEDVDFGKLVFRTVGFSGADIQNLVNEAAIMSVRKGHSKINQQDIVDVLDKQLLEGMGVLLTEEEQQRSEERVSIEKRRLLAVHEAGHILLAHLFPRFDWHAFSQLLPGGKETAITVFFPREDMVDQGYTTFGYMKMQMVVAHGGRCAERLIFGNDITDGGKDDLEKITKIAREMVISPQNSRLGLAALTKNIGMVDRPDNPDGELIRYRWDDPQVIPANMTPELSELFSRELARYIEETEELAMNGLRENRHILEMLTEELLEKSRITGLEVEEKMKGLSPAMFEDFIKPFQIDLDAEGALPHKDKLRYQPLDIYPAPLHRC 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6785021 6798303 + Cp4.1LG05g10360.1 Cpe05g01035 470240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01035 1001 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 9 1001 - -
Cpe05g01035 1001 Gene3D - 661 732 - -
Cpe05g01035 1001 SMART AAA_5 518 661 IPR003593 -
Cpe05g01035 1001 Pfam ATPase family associated with various cellular activities (AAA) 522 658 IPR003959 GO:0005524|GO:0016887
Cpe05g01035 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 729 IPR027417 -
Cpe05g01035 1001 Gene3D - 479 660 IPR027417 -
Cpe05g01035 1001 CDD AAA 520 659 - -
Cpe05g01035 1001 Gene3D Peptidase M41 744 959 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cpe05g01035 1001 Pfam Peptidase family M41 751 952 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cpe05g01035 1001 PANTHER ATP-DEPENDENT PROTEASE 9 1001 - -
Cpe05g01035 1001 SUPERFAMILY FtsH protease domain-like 754 964 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cpe05g01035 1001 Pfam AAA+ lid domain 681 723 IPR041569 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01035 Cpe16g00719 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01035 Cpe-Chr5:6785021 Cpe06g00033 Cpe-Chr6:168873 6.33E-83 dispersed
Cpe05g01035 Cpe-Chr5:6785021 Cpe02g00045 Cpe-Chr2:230234 1.27E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01035 K03798 - csv:101215439 1728.38