Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01044 ATGATGCTCCTCGGTGACCCTACCGCCGTCTATGGCGGCTCTGTGGTCGTCGTTGGGGTTAAAATGGATTCTCAGAGTCGGGAACTGCTTACTTGGGCGCTCGTTAAAGTTGCGCAGCCTGGAGATTGTGTCATTGCTCTTCATGTTCTTGATTCTGCCGTTGAGGGAAATTCGACTTTGCTCTCTCTTGTGAAGTCGTTTGACTCTGTATTGTCCGCCTATGACGGATTCTGCAACCTGAAGCAGGTTGAATTGAAGCTCAAGGTCTGCCGAGGCTCGCCGGTCCGGAAAATTATTAGACGGGAAGTTGATTCTTACGGCGAGGCTTCGCTAATTCTCGGTACTTCTAAAACTCACCATAGAATCCGTTCGTCGGTATCGGTTGCGAAGTACTGCGCTAGAAAATTGTCGAACAGATTCAGCGTTTTAGCCGTCAATAATGGCAAAGTTATTTTCCAGAGATTAGCGACTTTCCCAATTAAAGACCAGTCTCGAGACAAGGGTGGGGACAAGAACTATGCGACCATTGTAGAAGAAATTAATGAATCAAAATCTGTTGGGTTGGCTGCAAACTTTATCAATGGTCACCGGTTACACAAATCTGACTCTGGTTGTAATGATAAAACGGAGAGGGACTCTGTTCAGAGTGCTCTGTCTTTGCTTGAACGAAATGATTCCGCAACTGATTTGGTGGACCAGTTACAGGACAATGGTGTTTGGAATTCATTGGCTTTGGTACCATTTCAAAAGCCTCAAGAAATTTCGAAGTCGAATTCCATTGTCAAGCGAGGATCGTTGCAATGGAAATCGAGTTGGTCACTTCTGCGTCGGATATTTTTATCCAAGCAGCATGTAGACAAATCATCAAAGAAGTTTCCTATGTTCCAAGGTGTATTACACATACCAAACTTCCAGTCATCGTCGGCCTTGGTTTATCCAGACCAGAAACAAAACAGTTCTGATCAAGATCAGAGCTCCACAATTGATGGGGAAAATGGTGCAATTGTGCCATATGTGTCCAGCCATGTTTTGGAAAGCCTTCCTAAAGAGGTATTGGATTTAAAGGATAAATACTCGTCCACTTGCAGATTGTTTACTTATGAGGAACTTTTGTTGGCAACTTCTAATTTTATGCCTGAGAATATGGTTGGTAAAGGAGGGAGTAGCTATGTTTACCGAGGGCGTCTTCCCGATGGCAAGGAAATTGCTGTCAAAATTTTGAAGCCATCTGAGACTGTTCTAAAGGAGTTTGTTCAGGAAGTTGAGATCATTGCAACTTCAGCTCATAAGAATATTATATCTTTATTGGGTTTTTGTTTGGAGGACAATAATTTAGTTTTGGTCTATGATTTTCTTTCAAGAGGAAGTATGGAAGAGAATCTTCATGGTTGTAAGAAGGATGTGAATTCATTTGGTTGGCAAGAGAGGTTTAAGGTTGCTGTTGGTGTTGCTGAGGCACTTGACTATCTACACAATTGCAGGGAAGAAGCTGTGATACACAGGGATGTGAAATCCTCTAACATTCTTCTTTCGGAGAATTTCGAACCGCAGCTTTCGGATTTTGGCCTTGCTAGTTGGGCATCGTCGTGCTTACAAATCACTTGTACTGATGTAGCTGGAACATTTGGGTATGCCTACGCAAAGCCAATTCTGATGGAAGGCAAAGTTTCACAATTGCTAGATCCAAGCCTAGGCAGTGACTACAACCACGATCAAATAGGTCGAATGATTTTGGCTGCTACCCTTTGTATTAGACGAGCACCGAGACAACGCCCTCAAATCAGCCTGGTATTGAAACTTCTCCAAGGTGATGAGGAAATAACAACATGGGCAAGACAACAAATCGACGAATCAAACGAATTCGATGCGAGTGACGAAGAACCTCTACCTACTAACATCCAATCACACCTTAACCTAGCGTTGCTTGGCTTGGAAGATGACTTACTTTCTGTTAGCAGTGGAATACAAAGCATTTCCATAGAGGACTACTTGCAAGGTAGATGCAGCCGCTCTTCAAGCTTCAACTAG 2028 43.34 MMLLGDPTAVYGGSVVVVGVKMDSQSRELLTWALVKVAQPGDCVIALHVLDSAVEGNSTLLSLVKSFDSVLSAYDGFCNLKQVELKLKVCRGSPVRKIIRREVDSYGEASLILGTSKTHHRIRSSVSVAKYCARKLSNRFSVLAVNNGKVIFQRLATFPIKDQSRDKGGDKNYATIVEEINESKSVGLAANFINGHRLHKSDSGCNDKTERDSVQSALSLLERNDSATDLVDQLQDNGVWNSLALVPFQKPQEISKSNSIVKRGSLQWKSSWSLLRRIFLSKQHVDKSSKKFPMFQGVLHIPNFQSSSALVYPDQKQNSSDQDQSSTIDGENGAIVPYVSSHVLESLPKEVLDLKDKYSSTCRLFTYEELLLATSNFMPENMVGKGGSSYVYRGRLPDGKEIAVKILKPSETVLKEFVQEVEIIATSAHKNIISLLGFCLEDNNLVLVYDFLSRGSMEENLHGCKKDVNSFGWQERFKVAVGVAEALDYLHNCREEAVIHRDVKSSNILLSENFEPQLSDFGLASWASSCLQITCTDVAGTFGYAYAKPILMEGKVSQLLDPSLGSDYNHDQIGRMILAATLCIRRAPRQRPQISLVLKLLQGDEEITTWARQQIDESNEFDASDEEPLPTNIQSHLNLALLGLEDDLLSVSSGIQSISIEDYLQGRCSRSSSFN 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6907209 6910880 + Cp4.1LG05g10440.1 Cpe05g01044 470249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01044 675 Pfam Protein kinase domain 380 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g01044 675 Pfam Universal stress protein family 16 137 IPR006016 -
Cpe05g01044 675 Gene3D Phosphorylase Kinase; domain 1 339 451 - -
Cpe05g01044 675 Coils Coil 217 237 - -
Cpe05g01044 675 SUPERFAMILY Protein kinase-like (PK-like) 358 608 IPR011009 -
Cpe05g01044 675 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 546 669 - -
Cpe05g01044 675 ProSiteProfiles Protein kinase domain profile. 377 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g01044 675 PANTHER OS01G0253100 PROTEIN 546 669 IPR045271 GO:0004714|GO:0006468
Cpe05g01044 675 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 10 544 - -
Cpe05g01044 675 PANTHER OS01G0253100 PROTEIN 10 544 IPR045271 GO:0004714|GO:0006468
Cpe05g01044 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 498 510 IPR008271 GO:0004672|GO:0006468
Cpe05g01044 675 Gene3D - 16 177 - -
Cpe05g01044 675 ProSitePatterns Protein kinases ATP-binding region signature. 383 415 IPR017441 GO:0005524
Cpe05g01044 675 SMART serkin_6 377 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g01044 675 Gene3D Transferase(Phosphotransferase) domain 1 452 545 - -
Cpe05g01044 675 Gene3D Transferase(Phosphotransferase) domain 1 546 620 - -
Cpe05g01044 675 CDD USP_Like 23 145 - -
Cpe05g01044 675 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01044 - - - csv:101216673 1070.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01044 Cpe16g00096 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01992 Cpe-Chr1:17014590 Cpe05g01044 Cpe-Chr5:6907209 2.09E-46 dispersed
Cpe01g02077 Cpe-Chr1:17624119 Cpe05g01044 Cpe-Chr5:6907209 0 dispersed
Cpe05g01044 Cpe-Chr5:6907209 Cpe13g00644 Cpe-Chr13:6153030 0 dispersed
Cpe05g01353 Cpe-Chr5:9526951 Cpe05g01044 Cpe-Chr5:6907209 4.03E-09 dispersed
Cpe13g00559 Cpe-Chr13:5591022 Cpe05g01044 Cpe-Chr5:6907209 3.78E-23 dispersed
Cpe16g00727 Cpe-Chr16:7384870 Cpe05g01044 Cpe-Chr5:6907209 3.38E-47 wgd
Cpe16g00096 Cpe-Chr16:1789855 Cpe05g01044 Cpe-Chr5:6907209 1.80E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1322 . Blo16g00554 . . . Bpe13g00054 . Bma15g00776 Cmo02g00650 Cmo20g01056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00187 . . Bpe10g00266 Bpe06g00305 . Bma06g00472 . . . . Cma20g01050 . . Cpe05g01044 Cpe16g00096 Bhi10g01716 . . . . . . Cla02g00030 . . . . . . Lsi10g00758 . . Cme11g00032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005017 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 0 1 1 1 0 0 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62433 PF00069 Pkinase 9.80E-30 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01044 Cpe_Chr05 FPKM 39.133774 42.609436 36.224373 34.908615 24.939638 24.127728 22.107046 7.14155 7.520579 8.353568