Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01046 ATGGCTGAAAATGTGGCGTCGCCTCCGTTGAAGCTTTACTCGTCCTGGAGGAGCTCTTGTTCTCAACGTGTTCGAATTGCCCTAAACTTGAAAGGGCTAAATTTTGAGTACAAAGCCGTTAACCTACTGAAGGGAGAGCAATTCACTCCCGAGTATGAAAAACTCAATCCTATCGGTTATGTACCTACTCTCGTGGATGGGGATATCGTTATTGCCGACTCTTTTGCTATATTAATGTATTTAGAGGAGAAATATCCTCAGCATCCTCTGTTGCCAAGTGATCTGAGTAAAAGAGCTGTTAATTATCAGGCTGCAAACATTGTTTCTTCTAGCATACAGCCTCTTCAAAATCTAGTTGTTCTGAAGTACATTGAGGAAAAATCTGGTCCAGAGGAAAAACTTCATTGGGTTCAACGTGTCATTGAAAAAGGTTTTGCAGCACTTGAAAAGCTGCTAAAAGCTCATGCTGGAAAATTTGCTACTGGAGATGAAATCTTTCTGGCGGACGTGTTTTTGGCTCCTCAAATTCATGGCGCCATTAATAGATTCAGTGTTGACATGTCCAAATTTCCACTTTTATCCAGGTTGAATGAGGAATACAATGCCATAGCAGCATTTCAAGATGCAGAGCCATCAAAGCAGCCTGATGCTCCTCAAAGCTCTAGCTAA 669 41.7 MAENVASPPLKLYSSWRSSCSQRVRIALNLKGLNFEYKAVNLLKGEQFTPEYEKLNPIGYVPTLVDGDIVIADSFAILMYLEEKYPQHPLLPSDLSKRAVNYQAANIVSSSIQPLQNLVVLKYIEEKSGPEEKLHWVQRVIEKGFAALEKLLKAHAGKFATGDEIFLADVFLAPQIHGAINRFSVDMSKFPLLSRLNEEYNAIAAFQDAEPSKQPDAPQSSS 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6918361 6922485 - Cp4.1LG05g10520.1 Cpe05g01046 470251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01046 222 CDD GST_N_Zeta 10 82 IPR034333 -
Cpe05g01046 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 8 89 IPR004045 -
Cpe05g01046 222 PANTHER MALEYLACETOACETATE ISOMERASE 6 218 - -
Cpe05g01046 222 Gene3D Glutaredoxin 9 92 - -
Cpe05g01046 222 Pfam Glutathione S-transferase, N-terminal domain 12 88 IPR004045 -
Cpe05g01046 222 Pfam Glutathione S-transferase, C-terminal domain 123 202 IPR004046 -
Cpe05g01046 222 Gene3D - 93 220 - -
Cpe05g01046 222 SFLD Main (cytGST) 10 195 - -
Cpe05g01046 222 CDD GST_C_Zeta 97 214 IPR034330 -
Cpe05g01046 222 TIGRFAM maiA: maleylacetoacetate isomerase 11 217 IPR005955 GO:0003824|GO:0005737|GO:0009072
Cpe05g01046 222 PANTHER GLUTATHIONE S-TRANSFERASE 2-LIKE ISOFORM X1 6 218 - -
Cpe05g01046 222 SUPERFAMILY GST C-terminal domain-like 89 218 IPR036282 -
Cpe05g01046 222 SFLD Glutathione Transferase (cytosolic) 10 195 IPR040079 -
Cpe05g01046 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 94 219 IPR010987 -
Cpe05g01046 222 SUPERFAMILY Thioredoxin-like 7 92 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01046 K01800 maiA, GSTZ1; maleylacetoacetate isomerase [EC:5.2.1.2] - csv:101213302 366.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01046 Cpe-Chr5:6918361 Cpe08g00486 Cpe-Chr8:3114572 2.51E-89 dispersed
Cpe05g01046 Cpe-Chr5:6918361 Cpe05g01048 Cpe-Chr5:6927048 7.99E-120 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe12g00950 . 1 209 Glutathione S-transferase Gene Family AT4G02520 59.9 2.0e-65 246.1
Cpe17g00797 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 1.1e-63 240.4
Cpe17g00796 . 5 210 Glutathione S-transferase Gene Family AT4G02520 56.9 9.4e-60 227.3
Cpe12g00950 . 1 210 Glutathione S-transferase Gene Family AT2G02930 61.0 6.1e-67 251.1
Cpe17g00797 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.2 3.7e-64 241.9
Cpe17g00796 . 5 211 Glutathione S-transferase Gene Family AT2G02930 57.6 7.2e-60 227.6
Cpe17g00797 . 5 206 Glutathione S-transferase Gene Family AT1G02950 54.7 2.1e-61 233.0
Cpe12g00950 . 3 206 Glutathione S-transferase Gene Family AT1G02950 55.1 1.6e-58 223.4
Cpe17g00796 . 6 207 Glutathione S-transferase Gene Family AT1G02950 54.2 1.8e-57 219.9
Cpe12g00950 . 1 210 Glutathione S-transferase Gene Family AT1G02930 59.5 2.5e-65 245.7
Cpe17g00797 . 1 210 Glutathione S-transferase Gene Family AT1G02930 57.1 3.6e-64 241.9
Cpe17g00796 . 5 211 Glutathione S-transferase Gene Family AT1G02930 55.6 1.6e-59 226.5
Cpe12g00950 . 1 210 Glutathione S-transferase Gene Family AT1G02920 61.0 1.0e-66 250.4
Cpe17g00797 . 1 210 Glutathione S-transferase Gene Family AT1G02920 57.1 9.6e-65 243.8
Cpe17g00796 . 5 211 Glutathione S-transferase Gene Family AT1G02920 57.0 6.4e-61 231.1
Cpe17g00797 . 1 214 Glutathione S-transferase Gene Family AT2G47730 56.7 6.8e-68 254.6
Cpe12g00950 . 1 214 Glutathione S-transferase Gene Family AT2G47730 57.7 7.0e-65 244.6
Cpe17g00796 . 4 214 Glutathione S-transferase Gene Family AT2G47730 55.2 6.2e-61 231.5
Cpe10g00926 . 3 210 Glutathione S-transferase Gene Family AT3G09270 54.1 5.4e-66 248.1
Cpe01g00281 . 675 885 Glutathione S-transferase Gene Family AT1G69930 50.5 7.4e-58 221.1
Cpe01g00281 . 675 882 Glutathione S-transferase Gene Family AT1G59670 52.1 2.0e-55 213.0
Cpe01g00281 . 675 882 Glutathione S-transferase Gene Family AT1G59700 54.0 3.9e-59 225.3
Cpe01g00281 . 675 889 Glutathione S-transferase Gene Family AT1G10370 60.8 4.7e-73 271.6
Cpe01g00281 . 675 889 Glutathione S-transferase Gene Family AT1G10360 58.1 9.1e-69 257.3
Cpe01g00578 . 438 653 Glutathione S-transferase Gene Family AT1G78380 64.4 1.3e-83 306.6
Cpe01g01970 . 1 204 Glutathione S-transferase Gene Family AT1G78380 54.4 2.0e-60 229.6
Cpe14g00390 . 1 173 Glutathione S-transferase Gene Family AT1G78380 53.3 1.1e-58 223.8
Cpe01g00578 . 444 652 Glutathione S-transferase Gene Family AT1G78370 60.8 1.1e-74 276.9
Cpe01g01970 . 1 201 Glutathione S-transferase Gene Family AT1G78370 52.2 4.8e-59 224.9
Cpe14g00390 . 1 173 Glutathione S-transferase Gene Family AT1G78370 52.3 3.4e-57 218.8
Cpe01g00578 . 438 651 Glutathione S-transferase Gene Family AT1G78340 60.3 6.7e-77 284.3
Cpe01g01970 . 1 201 Glutathione S-transferase Gene Family AT1G78340 50.7 1.0e-56 217.2
Cpe14g00390 . 1 173 Glutathione S-transferase Gene Family AT1G78340 51.4 2.7e-54 209.1
Cpe14g00390 . 1 178 Glutathione S-transferase Gene Family AT1G78320 51.8 1.7e-47 186.4
Cpe01g00578 . 438 655 Glutathione S-transferase Gene Family AT1G17180 62.8 2.4e-82 302.4
Cpe14g00390 . 1 178 Glutathione S-transferase Gene Family AT1G17180 55.7 1.3e-64 243.4
Cpe01g01970 . 1 207 Glutathione S-transferase Gene Family AT1G17180 54.1 5.5e-63 238.0
Cpe03g01662 . 1 156 Glutathione S-transferase Gene Family AT1G17180 52.2 3.0e-40 162.5
Cpe01g00578 . 440 653 Glutathione S-transferase Gene Family AT1G17190 55.6 1.6e-70 263.1
Cpe01g00578 . 440 657 Glutathione S-transferase Gene Family AT3G43800 55.4 6.3e-70 261.2
Cpe01g00578 . 441 655 Glutathione S-transferase Gene Family AT1G53680 56.7 1.7e-67 253.1
Cpe01g01970 . 1 207 Glutathione S-transferase Gene Family AT1G53680 55.5 9.9e-60 227.3
Cpe05g01048 . 52 222 Glutathione S-transferase Gene Family AT2G02390 67.3 3.1e-62 235.3
Cpe05g01046 . 51 221 Glutathione S-transferase Gene Family AT2G02390 65.5 1.0e-60 230.3
Cpe08g00486 . 79 242 Glutathione S-transferase Gene Family AT2G02390 52.7 7.7e-45 177.6
Cpe05g01046 . 10 220 Glutathione S-transferase Gene Family AT2G02380 62.6 7.0e-74 274.2
Cpe05g01048 . 11 220 Glutathione S-transferase Gene Family AT2G02380 62.4 7.8e-73 270.8
Cpe08g00486 . 36 241 Glutathione S-transferase Gene Family AT2G02380 53.6 6.4e-59 224.6
Cpe14g00502 . 1 237 Glutathione S-transferase Gene Family AT5G41210 69.2 2.2e-92 335.9
Cpe01g00659 . 1 179 Glutathione S-transferase Gene Family AT5G41210 68.2 3.5e-66 248.8
Cpe14g00502 . 1 237 Glutathione S-transferase Gene Family AT5G41240 67.5 9.2e-89 325.1
Cpe01g00659 . 1 179 Glutathione S-transferase Gene Family AT5G41240 65.9 2.5e-62 237.3
Cpe08g01131 . 10 236 Glutathione S-transferase Gene Family AT5G02780 68.9 4.8e-89 324.7
Cpe08g01131 . 5 237 Glutathione S-transferase Gene Family AT3G55040 60.9 4.3e-79 292.0
Cpe08g01131 . 10 236 Glutathione S-transferase Gene Family AT5G02790 69.6 2.5e-93 339.0
Cpe03g00710 . 66 273 Glutathione S-transferase Gene Family AT1G19570 61.2 3.0e-74 275.4
Cpe01g00205 . 303 476 Glutathione S-transferase Gene Family AT1G19570 73.1 3.1e-71 265.4
Cpe01g01113 . 1 182 Glutathione S-transferase Gene Family AT1G19570 58.0 4.8e-64 241.5
Cpe01g00205 . 303 478 Glutathione S-transferase Gene Family AT1G75270 75.7 1.4e-76 283.1
Cpe03g00710 . 66 273 Glutathione S-transferase Gene Family AT1G75270 63.6 1.4e-76 283.1
Cpe01g01113 . 1 183 Glutathione S-transferase Gene Family AT1G75270 62.4 1.0e-69 260.4
Cpe03g00710 . 55 275 Glutathione S-transferase Gene Family AT5G16710 76.9 6.0e-101 364.4
Cpe01g00205 . 304 477 Glutathione S-transferase Gene Family AT5G16710 62.1 6.5e-63 238.0
Cpe01g01113 . 3 181 Glutathione S-transferase Gene Family AT5G16710 52.9 4.1e-57 218.8
Cpe06g00604 CCT 1 267 Glutathione S-transferase Gene Family AT1G77290 68.9 5.8e-107 384.4
Cpe02g00572 CCT 1 270 Glutathione S-transferase Gene Family AT1G77290 67.0 3.2e-105 378.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000862 1 6 2 2 2 2 3 2 2 2 1 1 3 3 3 3 1 3 3 2 3 2 3 3 4 2 3 8 7 3 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01046 Cpe_Chr05 FPKM 2.548159 2.340698 1.813089 2.241501 1.325609 0.924154 1.129597 0.712718 0.698696 1.222337