Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01060 ATGGATGAGAATTCCTCAATCTTCAATAGCACAGAGGATAAAATCGTCTGCTATGCGCCAAGAATGATCACAACAAATGGGGTGTGGCAAGGCGACAACCCTTTGGAGTATTCTCTCCCTCTCTTCATCCTGCAGTTAACAATGGTGGTTATGATGACTCGCGCTTTGGTTTTCCTCTTAAAACCCTTTCGTCAACCTCGAGTCATCTCTGAAATTTTGGGTGGAGTGATTTTGGGGCCTTCAGTACTGGGGAGGAGTGATCAATTTTCCAACGCTTTATTTCCTTTAAGAAGTGTAATGGTGCTTGAAGCAATGGCAAACGTGGGGCTTCTCTACTTTCTGTTCTTGATTGGTGTGGAGATGGAACTCTCAGTGATTCGTCGATCTGGTAGGAAGGCAATGGCAATAGCTGCAGCAGGAATGGTTCTTCCATTCGGAATAGGAGCTGCTTTTTCATTCCAGCTGCACAAAGCAGATCAGAAACTGAACTACAGCACTTATATCATGTTTCTTGGTATTGCACTCTCTGTGACTGCTTTCCCAGTGCTTGCTAGAATTCTCGCAGAGCTTAAATTGATAAACTCAGAGCTTGGAAGGATGGCTATGGCTTCTGCCCTTTTCAATGATATGTGCGCTTGGGTTCTCTTAGCTTTAGCCCTAGCCTTGTCTGAGAACGATTCCTCATCTCTGGCTTCTCTATGGGTTGTACTATCGAGTACAGGCTTTGTCTTGTTCTGTATCTTCATAATTAGACCGATTATCACATGGATGATTCGAAAAACCCCAGAAGGAGAAAGTATGAGTGAGTTCAGTATTTGTTTGATCCTCACAGGGGTTATGATCTCAGGGTTTATCACAGATGCCATAGGAACACACTCAGTTTTTGGAGCTTTTGTGTTTGGGTTGGTCATCCCAAATGGATCACTTGGAGTGGCTTTGATTGAGAAACTTGAGGATTTTGTTTCAGGGCTTTTGCTCCCTCTCTTCTTTGCAATAAGTGGGCTCAAGACTAACGTGAGTAGCATAGAGGGATTAATGACTTGGGTATCTATTCTGTTCATCACTGTCCTTGCTTTCATTGGCAAGGTCATTGGAACTCTCCTTGCCTCCGTTTGTTATCAGATGTCCTATCGCGAAGGTGTCACATTAGGCTTGCTTATGAACACCAAAGGCCTTGTTGAAATGATCATCCTCAACGTCGGAAAGGACCAACAGATATTAGATGATCAAACATTCACAGTAATGGTGATTGTAGCCCTCATTATGACAGGGATAATAACACCTGTAGTTACCATACTCTATAGGCCAACAAGAAGGCTTCTACCGTATAAGAAACGAACAATCCAAGCTTCAAAGCCAGATTCGGAGTTCAGAGTATTGGTTTGCATCCACACACCTCGAAATGTGCCGACAATCATCAACCTCCTGGATGCTTCCAACCCAACCAAAAGGTCCCCAATTTGCATTTATGTGCTACACTTGGTCGAACTCACAGGCCGAGCATCCGCCATGCTCATTGTCCACAACACCAGAAAATCAGGTCGCCCTGCCGTAAATCGAACCCAAGCTCATTCAGAACATATCATCAGTGCATTCGAGAACTATGAACAACACATCGATTGCGTCTCTGTTCAGCCTCTAACAGCTATTTCCCCTTACTCCACAATGCACGAAGACATCTGCTATTTAGCCGAGGACAAACGCGTCGCCTTCATAATCATCCCATTCCACAAGCAACAAACAGTGGATGGAGGAATGGAATCCACAAATCCAGCACTTAGATTGGTTAACCAAAATGTGTTAGTCAGTGCCCCTTGCTCCGTCGGAATCTTAGTCGATCGAGGCCTAAGTGGCTCGAATCAAAGCGGATCGAACAAAGCGTCTCATTACAACATAATCGTGTTGTTCTTCGGTGGACAAGACGACAGAGAAGCTCTAGCATACGCATGGAGAATGTCAGAAAATCCAAGAGTGACCTTAACCGTAATGCGATTCATCGCCGCAGAACAAGTAATAGCAGCAAAACAAGAAGCAAATGCACAAGGAGTTTCAGCAATGCAAATAGATACGGACAATGAGAGGCAGCTGGATGAAGAATACATAAATGAATTCATGATAAGTAATGAAGAAAACGATTCAATTACATACACACAGAGAATCTTGAACAACGGCGAGGAGACAGTGGCGGCCATAAGATCAATGGACGGTGCTCACGACCTGTTCATCGTTGGCAGAGGAGAAGCTCAAGCATCGCCACTCATCGCTGGACTCACAGACTGGAGCGAATGTCCAGAGCTTGGAGTAATCGGCGATTTGCTAGCTTCGTCCGATTTAGCAGCGACGGCTTCAGTTTTGGTAGTGGAACAGTTCGGAGTAGCCATGGTGGCGGAGCATGGAGAAGCAGAAAGGTCACCGCATCGCCACGATCAAGGCGACCACTACCAAAACTTGAGATCCACGAATGCGAGGCAACATATTCCATCAAGATCTCATATTATATACAATGGATAG 2511 44.92 MDENSSIFNSTEDKIVCYAPRMITTNGVWQGDNPLEYSLPLFILQLTMVVMMTRALVFLLKPFRQPRVISEILGGVILGPSVLGRSDQFSNALFPLRSVMVLEAMANVGLLYFLFLIGVEMELSVIRRSGRKAMAIAAAGMVLPFGIGAAFSFQLHKADQKLNYSTYIMFLGIALSVTAFPVLARILAELKLINSELGRMAMASALFNDMCAWVLLALALALSENDSSSLASLWVVLSSTGFVLFCIFIIRPIITWMIRKTPEGESMSEFSICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVSSIEGLMTWVSILFITVLAFIGKVIGTLLASVCYQMSYREGVTLGLLMNTKGLVEMIILNVGKDQQILDDQTFTVMVIVALIMTGIITPVVTILYRPTRRLLPYKKRTIQASKPDSEFRVLVCIHTPRNVPTIINLLDASNPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPAVNRTQAHSEHIISAFENYEQHIDCVSVQPLTAISPYSTMHEDICYLAEDKRVAFIIIPFHKQQTVDGGMESTNPALRLVNQNVLVSAPCSVGILVDRGLSGSNQSGSNKASHYNIIVLFFGGQDDREALAYAWRMSENPRVTLTVMRFIAAEQVIAAKQEANAQGVSAMQIDTDNERQLDEEYINEFMISNEENDSITYTQRILNNGEETVAAIRSMDGAHDLFIVGRGEAQASPLIAGLTDWSECPELGVIGDLLASSDLAATASVLVVEQFGVAMVAEHGEAERSPHRHDQGDHYQNLRSTNARQHIPSRSHIIYNG 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7011636 7015009 + Cp4.1LG05g10580.1 Cpe05g01060 470265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01060 836 Gene3D - 41 440 IPR038770 -
Cpe05g01060 836 MobiDBLite consensus disorder prediction 799 814 - -
Cpe05g01060 836 MobiDBLite consensus disorder prediction 798 821 - -
Cpe05g01060 836 Pfam Sodium/hydrogen exchanger family 49 432 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cpe05g01060 836 PANTHER BNAA09G08340D PROTEIN 12 807 - -
Cpe05g01060 836 PANTHER CATION/H + ANTIPORTER 12 807 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01060 - - - csv:101219265 1370.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00640 Cpe-Chr1:3695270 Cpe05g01060 Cpe-Chr5:7011636 6.43E-29 dispersed
Cpe01g01007 Cpe-Chr1:5968139 Cpe05g01060 Cpe-Chr5:7011636 3.34E-172 dispersed
Cpe02g01139 Cpe-Chr2:10379670 Cpe05g01060 Cpe-Chr5:7011636 1.26E-170 dispersed
Cpe03g00636 Cpe-Chr3:3792185 Cpe05g01060 Cpe-Chr5:7011636 8.43E-163 dispersed
Cpe05g01060 Cpe-Chr5:7011636 Cpe16g00093 Cpe-Chr16:1768499 0 dispersed
Cpe09g00665 Cpe-Chr9:5502236 Cpe05g01060 Cpe-Chr5:7011636 9.26E-107 dispersed
Cpe12g00834 Cpe-Chr12:7403559 Cpe05g01060 Cpe-Chr5:7011636 4.45E-107 dispersed
Cpe05g01060 Cpe-Chr5:7011636 Cpe14g00481 Cpe-Chr14:3033071 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g848 . . . . . . . . . . . . . . . Cpe05g01060 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00632 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g01060 . 10 790 Antiporter Super Family AT2G13620 71.3 0.0e+00 1113.2
Cpe16g00093 . 21 781 Antiporter Super Family AT2G13620 66.6 1.0e-303 1039.6
Cpe19g00367 . 75 807 Antiporter Super Family AT3G53720 59.3 5.7e-232 801.2
Cpe01g00640 . 839 1522 Antiporter Super Family AT3G53720 50.1 2.1e-181 633.3
Cpe10g00875 . 88 641 Antiporter Super Family AT3G53720 59.9 5.8e-176 615.1
Cpe14g00481 . 1607 2403 Antiporter Super Family AT5G41610 68.4 1.4e-305 1045.8
Cpe01g00640 . 757 1522 Antiporter Super Family AT5G41610 66.9 1.1e-294 1009.6
Cpe01g00640 . 757 1522 Antiporter Super Family AT4G23700 67.4 2.6e-291 998.4
Cpe14g00481 . 11 796 Antiporter Super Family AT4G23700 64.4 5.1e-287 984.2
Cpe01g00640 . 760 1522 Antiporter Super Family AT3G17630 64.0 2.8e-274 941.8
Cpe14g00481 . 809 1574 Antiporter Super Family AT3G17630 63.5 3.6e-269 924.9
Cpe14g00481 . 3 777 Antiporter Super Family AT1G64170 58.1 1.3e-239 826.6
Cpe01g00640 . 767 1522 Antiporter Super Family AT1G64170 57.7 9.3e-233 803.9
Cpe05g01060 . 10 790 Antiporter Super Family AT2G13620 71.3 0.0e+00 1113.2
Cpe16g00093 . 21 781 Antiporter Super Family AT2G13620 66.6 1.0e-303 1039.6
Cpe14g00481 . 3 777 Antiporter Super Family AT1G64170 58.1 1.3e-239 826.6
Cpe01g00640 . 767 1522 Antiporter Super Family AT1G64170 57.7 9.3e-233 803.9
Cpe01g00640 . 757 1522 Antiporter Super Family AT4G23700 67.4 2.6e-291 998.4
Cpe14g00481 . 11 796 Antiporter Super Family AT4G23700 64.4 5.1e-287 984.2
Cpe14g00481 . 1607 2403 Antiporter Super Family AT5G41610 68.4 1.4e-305 1045.8
Cpe01g00640 . 757 1522 Antiporter Super Family AT5G41610 66.9 1.1e-294 1009.6
Cpe01g00640 . 760 1522 Antiporter Super Family AT3G17630 64.0 2.8e-274 941.8
Cpe14g00481 . 809 1574 Antiporter Super Family AT3G17630 63.5 3.6e-269 924.9
Cpe19g00367 . 75 807 Antiporter Super Family AT3G53720 59.3 5.7e-232 801.2
Cpe01g00640 . 839 1522 Antiporter Super Family AT3G53720 50.1 2.1e-181 633.3
Cpe10g00875 . 88 641 Antiporter Super Family AT3G53720 59.9 5.8e-176 615.1
Cpe12g00834 CST 47 790 Antiporter Super Family AT3G52080 54.1 9.2e-233 803.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01060 Cpe_Chr05 FPKM 21.371273 26.686007 29.131586 30.696562 12.892897 12.68729 19.841568 4.012127 5.896418 5.233884