Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01063 ATGGTTGATAAGATGAGTAATTTGAGTAAAAACATGGGGTTCAATAAGAGTGTTTCGTTTGGTAGAAGGGCTTTAAGTTCTGGTAGCCCCAGGGTGAGTCGTGTGGGGTGGATCTCCCGTTGGTATCATGTGTTTATTGGCATTGGATTTCTTGTTTCATCTCTTGTAGTGATTACTGCTGGTTATATTCATGTATTGCCTGCTCTTCCTCTGTCTTCTCATCATAATGATGTTTCGAAATCGAGTTATTCGAATGGAAGCTGCAATATGTATGAAGGAAACTGGATCTTGGATGATAGCTATCCACTTTACAATGCTACAGACTGTCCTTTTGCTGAGAAGGGATTTGATTGCTTAGGTAATGGTAGGGTGGATCAGAGTTATCTGAAATGGAGGTGGAAACCGATGAATTGTGATGTGCCAAAATTTGATGTGCAAAATGTGCTGGAAATGCTGCGGAGTAAAAGGGTTGTATTTGTTGGAGATTCCATGAGTAGAACACAATGGGAATCTTTGATATGCTTACTTATGAGTGGGGTTGAGGATAAAAGGAGTGTTTATGAGATGAATGGGAATACGATTACGAAGCGGATTAAATACTTAGGCGTTCGGTTTAGTTCCTTTAACTTCACGGTTGAGTTCTTTCGCTCGGTTTTCCTTGTGCAAGAAGGTCCGATGCCAAAACATTCACCTAAGAGGGTGAAGTCTGCCCTTAAACTTGATGTGTTGGATAGTATTAGCAGCCAGTGGATTGATTCAGATGTTCTTGTATTCAACACTGGACATTGGTGGGTTCCTGGGAAGTTGTTTGAAATTGGTTGCTATTTTCAGGTTGGGAATTCTCTAAAGCTTGGAATGTCAATTCCCACAGCTTTTGAAGTAGCACTTCGCACCTGGGCGTCCTGGATCGAGGAAAACATCGACACAAACAGAACCCATGTTTTCTTTCGTACTTTCGAGCCATCACATTGGAAGGACCATACCTTCAAATATTGCAGCGTTACCGACGAACCCGTGAATGAAACGAGAGGACGGGAGAAAAGCATATTTTCTGATACCATATTAGAGGTAGCAAAGAATATGAAAGCTCCCATTAATGTTTTGCGCATAACTTCGATGTCTGCGTTTCGAAGCGATGCACATGTCGGTAAATGGAGCGACAATCCATCAGTCCCAGATTGCAGTCATTGGTGCCTTCCTGGGGTGCCTGATGTGTGGAATCAAATTTTGGTGTCCTACCTGCTTACTGAATATGACAGCGTAGTTCAAAGAACGGTATAA 1281 42.15 MVDKMSNLSKNMGFNKSVSFGRRALSSGSPRVSRVGWISRWYHVFIGIGFLVSSLVVITAGYIHVLPALPLSSHHNDVSKSSYSNGSCNMYEGNWILDDSYPLYNATDCPFAEKGFDCLGNGRVDQSYLKWRWKPMNCDVPKFDVQNVLEMLRSKRVVFVGDSMSRTQWESLICLLMSGVEDKRSVYEMNGNTITKRIKYLGVRFSSFNFTVEFFRSVFLVQEGPMPKHSPKRVKSALKLDVLDSISSQWIDSDVLVFNTGHWWVPGKLFEIGCYFQVGNSLKLGMSIPTAFEVALRTWASWIEENIDTNRTHVFFRTFEPSHWKDHTFKYCSVTDEPVNETRGREKSIFSDTILEVAKNMKAPINVLRITSMSAFRSDAHVGKWSDNPSVPDCSHWCLPGVPDVWNQILVSYLLTEYDSVVQRTV 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7037914 7041363 - Cp4.1LG05g10620.1 Cpe05g01063 470268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01063 426 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 33 416 IPR029962 GO:0016413
Cpe05g01063 426 Pfam PMR5 N terminal Domain 87 139 IPR025846 -
Cpe05g01063 426 PANTHER PROTEIN TRICHOME BEREFRINGENCE-LIKE 7 33 416 IPR029964 -
Cpe05g01063 426 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 140 412 IPR026057 GO:0016740
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01063 - - - cmax:111499744 876.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00898 Cpe-Chr2:6435115 Cpe05g01063 Cpe-Chr5:7037914 1.80E-104 dispersed
Cpe05g01063 Cpe-Chr5:7037914 Cpe12g00221 Cpe-Chr12:1439966 5.25E-98 dispersed
Cpe05g01063 Cpe-Chr5:7037914 Cpe19g00487 Cpe-Chr19:4220187 1.24E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1281 Blo04g00965 . . . Bpe15g00402 . . . Cmo02g00629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01054 . . Bma03g01030 . . . . . . . . Cpe05g01063 . Bhi10g01666 . . . . . . Cla02g00060 Cam02g0061 Cec02g0063 Cco02g0056 Clacu02g0060 Cmu02g0059 Cre02g0399 Lsi10g00720 . . Cme11g00064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010327 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01063 Cpe_Chr05 FPKM 0.549784 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0