Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01067 ATGGTCAAGCAAAACAATCTCTTCATCACTGTTCCCACTCACTTCCGTTGCCCAATTTCTCTCGATCTCATGAAATCTCCAGTCAGTTTGGCCACCGGCGTCACCTACGACCGCTCCAGCATCCAGCGCTGGCTCGACTCCGGCAACAATACCTGTCCGGCTACTATGCAGCTCCTTCTCTCCAAGGATTTCGTTCCCAATTGCAATCTCAAGCGCCTTATTCAGATTTGGTCCCACACTCTCCACTTCCAATTTCCCCTCCATGATCATCATTTGGGGACGAATGCAACTCCGATTCGAAACCACTCTCACCCATCTTGCTCTGTTTCTGTTTCTCTCTCTAACTTACTCTGTTTTGCACCACCATTGGAGCAGAACGTCGAGTTTCTCCGCACGATTCACGGCCTTGTCCCCGTGCTTCTCGATGTTCTTGGAGGGGAGGGTAGTTGTGGTGATATTGAATGTTTTGAATTGGCGGTTAAGGTTTTGGATTTGGTGAGATGCGAAATTGAGGATCGAGAGGAGTTTATGAACTCGATGCTGAAAAGCAATCGCGATTGTCTGAGATCTCTGGCTCTTGTTCTGCAGCGAGGGAGTACGGAATCGCGAATTGGAACGGCGAGGATTCTGGAGTACGTCGCCATTAACGCCGAATCGAAGACCCTAATCGCCGAGAACGAAGGGATTCTATCCGAACTGATAGCTCTAATCGGAGTAGACAAAGATATGAAGCTAATCGAATCGGTGCTATCGTGCTTAATCGCAATATCAATGCCGAGACGCGTGAAAATCAGACTGGTTCAGTTAGGGGTAATAAAAGCCCTAACGAGGCTACTGTTGCAGAGGAACGCCGCCGTGGGGGTAACGGAGAAGGTTATGAGGCTGTTGGCGGCAGCGGCAGCGGTGGAGGAAGGGCGGTCGGAGATGTGCGAAAACGGAGGCGAATGCGTGGGTGGAATGGTGAGGAAAGTGATGAAGGTGTCGAGTGCGGCGACGGAGCAGGCGGTGACGGCGCTGTGGTGCATATGCTATTTGTTCCGGGAGGAGAGGGCTTTGGTGGCGGTGGCGGAGGCAAAAGGGGTGGAGAAGATACTGCTGGTGCTGCAGAGCGAGTGCCCGGCGCCGGTGAGGCAAATGGGGAAAGATCTGCTAAAGATCCTGAAGGTTAATTCCAAGTCCTTCACCCTCTCGTTTTATGATACTAACAGTTCTTACATTATGCCATTTTGA 1230 51.22 MVKQNNLFITVPTHFRCPISLDLMKSPVSLATGVTYDRSSIQRWLDSGNNTCPATMQLLLSKDFVPNCNLKRLIQIWSHTLHFQFPLHDHHLGTNATPIRNHSHPSCSVSVSLSNLLCFAPPLEQNVEFLRTIHGLVPVLLDVLGGEGSCGDIECFELAVKVLDLVRCEIEDREEFMNSMLKSNRDCLRSLALVLQRGSTESRIGTARILEYVAINAESKTLIAENEGILSELIALIGVDKDMKLIESVLSCLIAISMPRRVKIRLVQLGVIKALTRLLLQRNAAVGVTEKVMRLLAAAAAVEEGRSEMCENGGECVGGMVRKVMKVSSAATEQAVTALWCICYLFREERALVAVAEAKGVEKILLVLQSECPAPVRQMGKDLLKILKVNSKSFTLSFYDTNSSYIMPF 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7063600 7064829 + Cp4.1LG05g10560.1 Cpe05g01067 470272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01067 409 CDD RING-Ubox_PUB 15 57 IPR045210 -
Cpe05g01067 409 PANTHER WDSAM1 PROTEIN 5 409 IPR045185 GO:0061630
Cpe05g01067 409 SMART Ubox_2 14 77 IPR003613 GO:0004842|GO:0016567
Cpe05g01067 409 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 5 409 - -
Cpe05g01067 409 Pfam U-box domain 11 78 IPR003613 GO:0004842|GO:0016567
Cpe05g01067 409 Gene3D - 107 391 IPR011989 -
Cpe05g01067 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 84 IPR013083 -
Cpe05g01067 409 SUPERFAMILY ARM repeat 163 387 IPR016024 -
Cpe05g01067 409 SUPERFAMILY RING/U-box 7 79 - -
Cpe05g01067 409 ProSiteProfiles U-box domain profile. 10 84 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01067 Cpe10g00346 CCT
Cpe05g01067 Cpe19g00539 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01067 Cpe-Chr5:7063600 Cpe10g00346 Cpe-Chr10:2037028 1.23E-127 dispersed
Cpe05g01067 Cpe-Chr5:7063600 Cpe19g00539 Cpe-Chr19:4573975 6.27E-136 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01067 - - csv:101221867 530.406