Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe05g01071 | ATGGCCGATGCTGAGGATATCCAGCCACTTGTCTGCGATAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCTAGGGCAGTGTTTCCCAGCATTGTTGGTCGACCCCGACACACTGGTGTCATGGTAGGTATGGGCCAGAAGGATGCTTATGTCGGTGATGAGGCCCAATCCAAAAGAGGTATTCTCACCTTGAAATATCCCATTGAGCATGGTATTGTGAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCACCTGAAGAACACCCTGTGCTTCTTACTGAAGCACCTCTCAATCCCAAAGCTAACAGAGAAAAGATGACACAAATCATGTTTGAAACTTTTAATGTACCTGCTATGTATGTTGCTATCCAGGCCGTTCTATCTCTGTACGCCAGTGGTCGTACAACAGGTATTGTGCTGGACTCTGGTGATGGTGTTAGTCACACTGTGCCAATCTACGAGGGTTATGCTCTACCCCATGCTATCCTCCGTCTGGACCTTGNGGATTTGCTTTAG | 561 | 47.06 | MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLXDLL | 186 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7093739 | 7096028 | + | Cp4.1LG05g10750.1 | Cpe05g01071 | 470276 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe05g01071 | 186 | Gene3D | - | 156 | 182 | - | - | |
Cpe05g01071 | 186 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - | |
Cpe05g01071 | 186 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
Cpe05g01071 | 186 | Gene3D | Actin; Chain A, domain 2 | 36 | 73 | - | - | |
Cpe05g01071 | 186 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 177 | - | - | |
Cpe05g01071 | 186 | PANTHER | - | 1 | 183 | - | - | |
Cpe05g01071 | 186 | SMART | actin_3 | 7 | 186 | IPR004000 | - | |
Cpe05g01071 | 186 | SUPERFAMILY | Actin-like ATPase domain | 148 | 182 | IPR043129 | - | |
Cpe05g01071 | 186 | Pfam | Actin | 5 | 182 | IPR004000 | - | |
Cpe05g01071 | 186 | Gene3D | - | 4 | 155 | - | - | |
Cpe05g01071 | 186 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
Cpe05g01071 | 186 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
Cpe05g01071 | 186 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
Cpe05g01071 | 186 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
Cpe05g01071 | 186 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
Cpe05g01071 | 186 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
Cpe05g01071 | 186 | PANTHER | ACTIN | 1 | 183 | IPR004000 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe05g01071 | Cpe-Chr5:7093739 | Cpe19g00544 | Cpe-Chr19:4606352 | 1.51E-135 | dispersed | |
Cpe16g00072 | Cpe-Chr16:1494604 | Cpe05g01071 | Cpe-Chr5:7093739 | 2.07E-135 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe05g01071 | K10355 | - | qsu:112025577 | 374.015 |