Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01071 ATGGCCGATGCTGAGGATATCCAGCCACTTGTCTGCGATAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCTAGGGCAGTGTTTCCCAGCATTGTTGGTCGACCCCGACACACTGGTGTCATGGTAGGTATGGGCCAGAAGGATGCTTATGTCGGTGATGAGGCCCAATCCAAAAGAGGTATTCTCACCTTGAAATATCCCATTGAGCATGGTATTGTGAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCACCTGAAGAACACCCTGTGCTTCTTACTGAAGCACCTCTCAATCCCAAAGCTAACAGAGAAAAGATGACACAAATCATGTTTGAAACTTTTAATGTACCTGCTATGTATGTTGCTATCCAGGCCGTTCTATCTCTGTACGCCAGTGGTCGTACAACAGGTATTGTGCTGGACTCTGGTGATGGTGTTAGTCACACTGTGCCAATCTACGAGGGTTATGCTCTACCCCATGCTATCCTCCGTCTGGACCTTGNGGATTTGCTTTAG 561 47.06 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLXDLL 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7093739 7096028 + Cp4.1LG05g10750.1 Cpe05g01071 470276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01071 186 Gene3D - 156 182 - -
Cpe05g01071 186 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cpe05g01071 186 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cpe05g01071 186 Gene3D Actin; Chain A, domain 2 36 73 - -
Cpe05g01071 186 CDD NBD_sugar-kinase_HSP70_actin 10 177 - -
Cpe05g01071 186 PANTHER - 1 183 - -
Cpe05g01071 186 SMART actin_3 7 186 IPR004000 -
Cpe05g01071 186 SUPERFAMILY Actin-like ATPase domain 148 182 IPR043129 -
Cpe05g01071 186 Pfam Actin 5 182 IPR004000 -
Cpe05g01071 186 Gene3D - 4 155 - -
Cpe05g01071 186 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cpe05g01071 186 PRINTS Actin signature 28 37 IPR004000 -
Cpe05g01071 186 PRINTS Actin signature 117 130 IPR004000 -
Cpe05g01071 186 PRINTS Actin signature 142 161 IPR004000 -
Cpe05g01071 186 PRINTS Actin signature 63 85 IPR004000 -
Cpe05g01071 186 PRINTS Actin signature 51 62 IPR004000 -
Cpe05g01071 186 PANTHER ACTIN 1 183 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01071 Cpe-Chr5:7093739 Cpe19g00544 Cpe-Chr19:4606352 1.51E-135 dispersed
Cpe16g00072 Cpe-Chr16:1494604 Cpe05g01071 Cpe-Chr5:7093739 2.07E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01071 K10355 - qsu:112025577 374.015