Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe05g01072 | ATGACTCTGTTCCTTCGTTTTTATTNTGGTCGTGATCTAACTGATGCCTTGATGAAGATTCTCACTGAGAGAGGGTACATGTTCACAACCACTGCTGAACGGGAAATTGTCCGTGACATGAAAGAAAAGCTTGCTTATGTTGCACTCGACTATGAGCAGGAACTCGAGACTGCTAAGAGTAGCTCCTCAATTGAGAAGAACTACGAACTGCCTGATGGGCAAGTCATCACAATCGGAGCTGAGAGATTCCGTTGCCCTGAAGTTCTTTTCCAGCCATCTCTCATTGGAATGGAAGCTGCTGGAATCCATGAGACTACCTACAACTCAATCATGAAGTGTGATGTGGATATCAGAAAAGATTTGTATGGTAACATTGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGCATCGCAGACAGAATGAGCAAAGAGATCACAGCTCTTGCTCCAAGCAGCATGAAAATTAAAGTCGTTGCACCTCCTGAAAGGAAATACAGTGTCTGGATTGGAGGGTCAATCCTTGCATCGCTCAGCACCTTCCAGCAGATGTGGATTTCGAAGGGTGAGTATGATGAATCTGGCCCATCCATCGTCCACAGGAAGTGCTTCTAA | 612 | 45.42 | MTLFLRFYXGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF | 203 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 7096182 | 7100548 | + | Cp4.1LG05g10740.1 | Cpe05g01072 | 470277 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe05g01072 | 203 | Gene3D | - | 100 | 166 | - | - | |
| Cpe05g01072 | 203 | Pfam | Actin | 10 | 203 | IPR004000 | - | |
| Cpe05g01072 | 203 | ProSitePatterns | Actins signature 2. | 184 | 192 | IPR004001 | - | |
| Cpe05g01072 | 203 | SUPERFAMILY | Actin-like ATPase domain | 8 | 203 | IPR043129 | - | |
| Cpe05g01072 | 203 | SMART | actin_3 | 1 | 203 | IPR004000 | - | |
| Cpe05g01072 | 203 | Gene3D | - | 167 | 197 | - | - | |
| Cpe05g01072 | 203 | PANTHER | ACTIN | 9 | 202 | IPR004000 | - | |
| Cpe05g01072 | 203 | Gene3D | Actin; Chain A, domain 4 | 9 | 99 | - | - | |
| Cpe05g01072 | 203 | PANTHER | BNAC02G00690D PROTEIN | 9 | 202 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe05g01072 | Cpe-Chr5:7096182 | Cpe04g00400 | Cpe-Chr4:4643168 | 6.36E-137 | dispersed | |
| Cpe05g01072 | Cpe-Chr5:7096182 | Cpe10g00351 | Cpe-Chr10:2078847 | 1.88E-142 | transposed | |
| Cpe05g01072 | Cpe-Chr5:7096182 | Cpe16g00072 | Cpe-Chr16:1494604 | 1.88E-142 | transposed | |
| Cpe05g01072 | Cpe-Chr5:7096182 | Cpe19g00544 | Cpe-Chr19:4606352 | 2.53E-142 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe05g01072 | K10355 | - | csv:101220617 | 387.111 |