Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01073 ATGGCAATCAGAGTTATGGACTTAGTGTCCGGAGCCTCGCTCAATTGTTTTCATTTCAAAAACAATAAAGGCTTTGTGAAATCTAGGGATTTCACTATCAGATGTTCTGTTCCTCTCTCTTCCCATGGCGCTGCCACCATTGATTTGGGAGAGAGGCCATGGAAGGTGTCGGATGCTCGGTTGGTGCTTGAAGATGGTTCAATCTGGAGGGCTAAGTCTTTTGGCGCTTCCGGAACCCAAGTTGGTGAAGTGGTTTTCAATACTTCTTTGACTGGCTATAATGGGCAGTTTGTCCTGATGACCAATCCCCACATCGGCAATACTGGTGTCAATTTCGATGATGAAGAAGCCAGGCAATGCTTCCTCGCTGGCCTGGTGATCAGAAGCCTAAGCATCAGCACTTCAAATTGGAGGTGTAAACAGACGCTTGGTGATTATTTAATTGAGAGAAACATCATGGGAATTTATGATGTTGACACTCGTGCTATTACTCGTCGGTTAAGGGAAGATGGAAGTCTTATTGGTGTTTTAAGCACTGAAAAGTCGAAATCTGATGATGAGCTATTGGAAATGTCTCGGTCATGGAACATTGTTGGTGTTGACTTAATTAGTGGTGTTTCATGCAAATCTCCTTATGAATGGGTGGATAGAACTGATTTGGAATGGGAATTCAAATCTGGTGGACAAGCTTCAGAGACCTTCCATGTTGTGGCCTATGATTTTGGAATCAAGAGTAACATACTTAGGCGCTTGGCATCTTATGGATGCAAAATCACTGTTGTCCCATCCACATGGGCGGCATCAGAGACCCTTAAGTTAAAGCCAGATGGGGTTCTTTTCAGCAACGGTCCGGGCATCCATCTGCAGTTCCTTATGCTGTTGAAACAGTCAAGCAACTACTTGGGAAGGTACCTGTTTTTGGAATTTGTATGGGCCATCAATTGCTTGGCCAGGCCTTGGGTGAATCACAACTACGCAGTCGATCCTGCATCCCTCCCAGAGGGTGTTGAAGTAACCCACGTCAATCTTAATGATGGAAGCTGTGCTGGTCTTGCTTACCCAAAGCTAAAAGTTATGTCTCTTCAATACCATCCTGAAGCATCTCCCGGGCCTCACGATTCCGACTCTGTTTTTGGAGATTTCATAGAGATGATGAAGCAAGAGAAGAGAAATGGTTAA 1179 44.7 MAIRVMDLVSGASLNCFHFKNNKGFVKSRDFTIRCSVPLSSHGAATIDLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYNGQFVLMTNPHIGNTGVNFDDEEARQCFLAGLVIRSLSISTSNWRCKQTLGDYLIERNIMGIYDVDTRAITRRLREDGSLIGVLSTEKSKSDDELLEMSRSWNIVGVDLISGVSCKSPYEWVDRTDLEWEFKSGGQASETFHVVAYDFGIKSNILRRLASYGCKITVVPSTWAASETLKLKPDGVLFSNGPGIHLQFLMLLKQSSNYLGRYLFLEFVWAINCLARPWVNHNYAVDPASLPEGVEVTHVNLNDGSCAGLAYPKLKVMSLQYHPEASPGPHDSDSVFGDFIEMMKQEKRNG 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7098807 7102291 - Cp4.1LG05g10800.1 Cpe05g01073 470278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01073 392 Gene3D - 56 196 IPR036480 -
Cpe05g01073 392 PANTHER CARBAMOYL-PHOSPHATE SYNTHASE ARGININE-SPECIFIC SMALL CHAIN 322 390 - -
Cpe05g01073 392 PANTHER CARBAMOYL-PHOSPHATE SYNTHASE ARGININE-SPECIFIC SMALL CHAIN 28 285 - -
Cpe05g01073 392 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 61 176 IPR002474 -
Cpe05g01073 392 SUPERFAMILY Class I glutamine amidotransferase-like 228 387 IPR029062 -
Cpe05g01073 392 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 235 391 - -
Cpe05g01073 392 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 322 390 - -
Cpe05g01073 392 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 58 192 IPR036480 -
Cpe05g01073 392 Gene3D - 310 390 IPR029062 -
Cpe05g01073 392 Gene3D - 197 295 IPR029062 -
Cpe05g01073 392 Pfam Glutamine amidotransferase class-I 239 285 IPR017926 -
Cpe05g01073 392 Pfam Glutamine amidotransferase class-I 320 383 IPR017926 -
Cpe05g01073 392 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 28 285 - -
Cpe05g01073 392 SMART CPSase_sm_chain_2 57 178 IPR002474 -
Cpe05g01073 392 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 275 289 - -
Cpe05g01073 392 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 236 250 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01073 K01956 carA, CPA1; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] - csv:101222857 657.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01188 Cpe-Chr1:7082364 Cpe05g01073 Cpe-Chr5:7098807 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1238 . . . . . . . . Cmo02g00618 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe05g01073 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005353 1 3 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01073 Cpe_Chr05 FPKM 6.190916 7.347901 6.001716 5.407039 0.0 0.0 0.0 0.0 0.0 0.0